Information for 12-TAGCCTATAA (Motif 20)

A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A
Reverse Opposite:
G A C T A C G T G T C A G A C T C T G A C T A G A T C G A G T C A C G T T G C A
p-value:1e-7
log p-value:-1.696e+01
Information Content per bp:1.828
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif271.5
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets95.7 +/- 50.8bp
Average Position of motif in Background100.6 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TAGCCTATAA
ACTAGCCAATCA
 A C G T A C G T A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TAGCCTATAA
BCAGACWA---
 A C G T A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TAGCCTATAA---
---CCAATAAAAC
 A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TAGCCTATAA--
--RGCAATNAAA
 A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TAGCCTATAA-
-AGCCAATCGG
 A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TAGCCTATAA---
---CCAATAAAAA
 A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TAGCCTATAA--
--CCYMATAAAA
 A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A A C G T A C G T
A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TAGCCTATAA--
--KGCCATAAAA
 A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A A C G T A C G T
A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TAGCCTATAA---------
----GTATAAAAGGCGGGG
 A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TAGCCTATAA--
--NCYAATAAAA
 A C G T C G T A C T A G T A G C A G T C G A C T C T G A A C G T T G C A C T G A A C G T A C G T
A C G T A C G T C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A