Information for 3-GGCATTTAAC (Motif 9)

A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C
Reverse Opposite:
C A T G A C G T A C G T C G T A T C G A T C G A C G A T T A C G A G T C T G A C
p-value:1e-10
log p-value:-2.367e+01
Information Content per bp:1.651
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif6.14%
Number of Background Sequences with motif1316.7
Percentage of Background Sequences with motif2.72%
Average Position of motif in Targets102.7 +/- 56.7bp
Average Position of motif in Background102.2 +/- 58.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GGCATTTAAC
-GCACTTAA-
 A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGCATTTAAC
NNCAATTANN
 A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

BARHL2/MA0635.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGCATTTAAC
ANCGTTTANN
 A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

Hmx1/MA0896.1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGCATTTAAC----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGCATTTAAC----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGCATTTAAC
ACCACTTAA-
 A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGCATTTAAC---
ACCGGCAATTAATAAA
 A C G T A C G T A C G T A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C A C G T A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGCATTTAAC
GGCCATTAAC
 A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GGCATTTAAC
NGTGGGCAT-----
 A C G T A C G T A C G T A C G T A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCATTTAAC
ACCACTTAA-
 A C T G T C A G A T G C G C T A A G C T A C G T G C A T T G C A T G C A G T A C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T