Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1283)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48410)	% of Background Sequences with Motif
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-3	-7.094e+00	0.3551	29.0	2.26%	566.4	1.17%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-3	-7.074e+00	0.3551	11.0	0.86%	129.8	0.27%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-6.899e+00	0.3551	241.0	18.74%	7507.2	15.51%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-5.831e+00	0.3551	250.0	19.44%	7983.0	16.49%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-5.398e+00	0.3873	428.0	33.28%	14462.2	29.88%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.266e+00	0.3873	60.0	4.67%	1591.4	3.29%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-4.961e+00	0.4285	155.0	12.05%	4799.5	9.92%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-2	-4.767e+00	0.4549	664.0	51.63%	23360.5	48.27%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-4.588e+00	0.4837	249.0	19.36%	8162.7	16.87%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-4.551e+00	0.4837	380.0	29.55%	12894.1	26.64%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-1	-4.425e+00	0.4837	559.0	43.47%	19519.8	40.33%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-4.253e+00	0.5072	707.0	54.98%	25112.6	51.89%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-4.242e+00	0.5072	97.0	7.54%	2910.8	6.01%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-4.215e+00	0.5072	153.0	11.90%	4840.9	10.00%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-1	-4.204e+00	0.5072	344.0	26.75%	11662.6	24.10%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-4.163e+00	0.5072	370.0	28.77%	12618.7	26.07%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-4.059e+00	0.5072	19.0	1.48%	415.0	0.86%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-1	-3.997e+00	0.5072	31.0	2.41%	775.5	1.60%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-3.984e+00	0.5072	147.0	11.43%	4667.2	9.64%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.912e+00	0.5072	21.0	1.63%	479.3	0.99%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.912e+00	0.5072	21.0	1.63%	479.3	0.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-3.860e+00	0.5072	201.0	15.63%	6591.2	13.62%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-3.824e+00	0.5072	19.0	1.48%	425.5	0.88%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.724e+00	0.5072	46.0	3.58%	1270.6	2.63%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-1	-3.640e+00	0.5072	34.0	2.64%	893.4	1.85%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-1	-3.585e+00	0.5072	290.0	22.55%	9845.6	20.34%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.579e+00	0.5072	174.0	13.53%	5686.3	11.75%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.545e+00	0.5072	155.0	12.05%	5021.6	10.38%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.540e+00	0.5072	15.0	1.17%	323.6	0.67%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.432e+00	0.5072	8.0	0.62%	137.8	0.28%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.390e+00	0.5072	89.0	6.92%	2747.5	5.68%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.347e+00	0.5072	25.0	1.94%	632.8	1.31%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.278e+00	0.5072	159.0	12.36%	5211.6	10.77%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.255e+00	0.5072	54.0	4.20%	1578.7	3.26%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.194e+00	0.5072	13.0	1.01%	281.5	0.58%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.189e+00	0.5072	2.0	0.16%	12.6	0.03%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-3.171e+00	0.5072	13.0	1.01%	282.9	0.58%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-3.117e+00	0.5072	130.0	10.11%	4216.6	8.71%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.099e+00	0.5072	16.0	1.24%	373.6	0.77%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.026e+00	0.5188	35.0	2.72%	974.3	2.01%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.025e+00	0.5188	80.0	6.22%	2488.0	5.14%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.965e+00	0.5253	327.0	25.43%	11350.2	23.45%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-1	-2.930e+00	0.5313	297.0	23.09%	10263.6	21.21%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.925e+00	0.5313	91.0	7.08%	2883.3	5.96%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.771e+00	0.5956	167.0	12.99%	5599.0	11.57%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-1	-2.582e+00	0.7035	60.0	4.67%	1861.1	3.85%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.548e+00	0.7128	9.0	0.70%	194.3	0.40%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.536e+00	0.7128	529.0	41.14%	18959.2	39.17%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-1	-2.521e+00	0.7128	403.0	31.34%	14282.2	29.51%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.480e+00	0.7170	90.0	7.00%	2920.1	6.03%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.466e+00	0.7170	5.0	0.39%	87.2	0.18%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-2.462e+00	0.7170	54.0	4.20%	1671.6	3.45%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-1	-2.461e+00	0.7170	4.0	0.31%	62.3	0.13%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.436e+00	0.7170	87.0	6.77%	2822.6	5.83%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.396e+00	0.7170	28.0	2.18%	801.8	1.66%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-1	-2.347e+00	0.7309	96.0	7.47%	3155.4	6.52%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-1	-2.314e+00	0.7420	110.0	8.55%	3658.3	7.56%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.305e+00	0.7420	352.0	27.37%	12469.3	25.76%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.291e+00	0.7420	35.0	2.72%	1045.4	2.16%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.276e+00	0.7420	27.0	2.10%	779.3	1.61%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.252e+00	0.7420	21.0	1.63%	584.6	1.21%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.231e+00	0.7420	697.0	54.20%	25376.8	52.43%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.231e+00	0.7420	25.0	1.94%	717.3	1.48%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.231e+00	0.7420	354.0	27.53%	12568.7	25.97%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.205e+00	0.7420	62.0	4.82%	1985.0	4.10%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-2.179e+00	0.7420	21.0	1.63%	590.0	1.22%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.166e+00	0.7420	67.0	5.21%	2165.0	4.47%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-2.102e+00	0.7690	294.0	22.86%	10399.1	21.49%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.086e+00	0.7706	45.0	3.50%	1411.1	2.92%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.052e+00	0.7854	19.0	1.48%	535.5	1.11%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.044e+00	0.7854	304.0	23.64%	10787.5	22.29%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.010e+00	0.7961	13.0	1.01%	345.0	0.71%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.983e+00	0.8073	135.0	10.50%	4628.3	9.56%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.971e+00	0.8073	76.0	5.91%	2516.9	5.20%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.953e+00	0.8096	159.0	12.36%	5505.9	11.38%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.942e+00	0.8096	426.0	33.13%	15344.1	31.70%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.899e+00	0.8319	67.0	5.21%	2210.1	4.57%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.894e+00	0.8319	35.0	2.72%	1091.7	2.26%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.862e+00	0.8417	29.0	2.26%	889.2	1.84%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.850e+00	0.8417	317.0	24.65%	11336.9	23.42%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.837e+00	0.8417	51.0	3.97%	1656.2	3.42%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.821e+00	0.8448	2.0	0.16%	27.3	0.06%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.820e+00	0.8448	70.0	5.44%	2331.2	4.82%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.808e+00	0.8448	429.0	33.36%	15510.7	32.05%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.790e+00	0.8448	28.0	2.18%	863.8	1.78%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.777e+00	0.8448	19.0	1.48%	560.0	1.16%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.764e+00	0.8448	196.0	15.24%	6910.0	14.28%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.757e+00	0.8448	9.0	0.70%	233.8	0.48%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.738e+00	0.8460	10.0	0.78%	266.4	0.55%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.735e+00	0.8460	43.0	3.34%	1391.9	2.88%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.716e+00	0.8460	312.0	24.26%	11202.9	23.15%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.703e+00	0.8471	15.0	1.17%	432.5	0.89%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.676e+00	0.8610	10.0	0.78%	270.1	0.56%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.664e+00	0.8622	28.0	2.18%	878.6	1.82%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.660e+00	0.8622	213.0	16.56%	7568.5	15.64%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.659e+00	0.8622	107.0	8.32%	3695.4	7.64%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.659e+00	0.8622	301.0	23.41%	10817.3	22.35%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.649e+00	0.8622	89.0	6.92%	3047.2	6.30%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.643e+00	0.8622	315.0	24.49%	11342.1	23.44%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.601e+00	0.8629	34.0	2.64%	1095.5	2.26%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.599e+00	0.8629	758.0	58.94%	27951.5	57.75%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.592e+00	0.8629	18.0	1.40%	543.9	1.12%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.590e+00	0.8629	410.0	31.88%	14896.4	30.78%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.575e+00	0.8629	391.0	30.40%	14195.2	29.33%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.568e+00	0.8629	4.0	0.31%	88.2	0.18%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.561e+00	0.8629	54.0	4.20%	1809.4	3.74%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.514e+00	0.8801	640.0	49.77%	23547.0	48.65%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.513e+00	0.8801	94.0	7.31%	3260.6	6.74%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.490e+00	0.8847	7.0	0.54%	185.3	0.38%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.485e+00	0.8847	129.0	10.03%	4543.3	9.39%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.475e+00	0.8847	2.0	0.16%	34.3	0.07%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.467e+00	0.8847	4.0	0.31%	92.5	0.19%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.444e+00	0.8934	174.0	13.53%	6207.9	12.83%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.430e+00	0.8986	85.0	6.61%	2954.7	6.10%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.400e+00	0.9177	194.0	15.09%	6960.5	14.38%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.380e+00	0.9284	12.0	0.93%	359.9	0.74%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.351e+00	0.9476	306.0	23.79%	11132.2	23.00%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.350e+00	0.9476	33.0	2.57%	1097.0	2.27%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.346e+00	0.9476	11.0	0.86%	328.7	0.68%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.325e+00	0.9478	77.0	5.99%	2689.0	5.56%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.302e+00	0.9620	129.0	10.03%	4599.6	9.50%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.288e+00	0.9679	245.0	19.05%	8894.0	18.38%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.286e+00	0.9679	4.0	0.31%	100.2	0.21%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.270e+00	0.9695	5.0	0.39%	133.6	0.28%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.266e+00	0.9695	148.0	11.51%	5311.5	10.97%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.266e+00	0.9695	24.0	1.87%	790.8	1.63%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.250e+00	0.9695	175.0	13.61%	6314.6	13.05%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.237e+00	0.9706	85.0	6.61%	3004.3	6.21%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.234e+00	0.9706	219.0	17.03%	7951.6	16.43%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.231e+00	0.9706	1.0	0.08%	13.8	0.03%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.211e+00	0.9731	156.0	12.13%	5626.1	11.62%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.203e+00	0.9734	59.0	4.59%	2063.3	4.26%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.202e+00	0.9734	9.0	0.70%	273.0	0.56%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.191e+00	0.9734	11.0	0.86%	342.5	0.71%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.185e+00	0.9734	51.0	3.97%	1776.2	3.67%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.170e+00	0.9767	33.0	2.57%	1127.7	2.33%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.169e+00	0.9767	551.0	42.85%	20389.4	42.13%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.157e+00	0.9767	68.0	5.29%	2403.1	4.97%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.153e+00	0.9767	91.0	7.08%	3248.3	6.71%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.152e+00	0.9767	234.0	18.20%	8544.0	17.65%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.152e+00	0.9767	19.0	1.48%	628.5	1.30%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.146e+00	0.9767	252.0	19.60%	9217.8	19.05%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.143e+00	0.9767	17.0	1.32%	558.6	1.15%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.140e+00	0.9767	13.0	1.01%	417.3	0.86%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.120e+00	0.9767	50.0	3.89%	1754.8	3.63%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.118e+00	0.9767	5.0	0.39%	142.3	0.29%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.117e+00	0.9767	135.0	10.50%	4884.4	10.09%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.107e+00	0.9767	14.0	1.09%	456.0	0.94%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.101e+00	0.9767	98.0	7.62%	3522.5	7.28%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.080e+00	0.9767	18.0	1.40%	602.5	1.24%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.052e+00	0.9901	42.0	3.27%	1477.5	3.05%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.047e+00	0.9901	34.0	2.64%	1186.4	2.45%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.032e+00	0.9967	65.0	5.05%	2326.8	4.81%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.029e+00	0.9967	3.0	0.23%	80.5	0.17%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.015e+00	1.0000	283.0	22.01%	10439.3	21.57%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.005e+00	1.0000	11.0	0.86%	361.8	0.75%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.992e-01	1.0000	33.0	2.57%	1159.0	2.39%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-9.861e-01	1.0000	21.0	1.63%	724.3	1.50%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.808e-01	1.0000	18.0	1.40%	616.7	1.27%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-9.752e-01	1.0000	47.0	3.65%	1678.6	3.47%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-9.671e-01	1.0000	29.0	2.26%	1019.3	2.11%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-9.670e-01	1.0000	1.0	0.08%	18.2	0.04%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.568e-01	1.0000	16.0	1.24%	547.7	1.13%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-9.525e-01	1.0000	282.0	21.93%	10436.1	21.56%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.513e-01	1.0000	75.0	5.83%	2719.2	5.62%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-9.440e-01	1.0000	4.0	0.31%	119.9	0.25%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-9.391e-01	1.0000	451.0	35.07%	16778.4	34.67%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-9.313e-01	1.0000	96.0	7.47%	3505.8	7.24%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-9.312e-01	1.0000	331.0	25.74%	12283.3	25.38%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-9.082e-01	1.0000	27.0	2.10%	957.6	1.98%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.068e-01	1.0000	257.0	19.98%	9526.1	19.68%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-8.977e-01	1.0000	58.0	4.51%	2105.1	4.35%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.959e-01	1.0000	50.0	3.89%	1809.3	3.74%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-8.873e-01	1.0000	58.0	4.51%	2108.8	4.36%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-8.868e-01	1.0000	107.0	8.32%	3931.1	8.12%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.752e-01	1.0000	82.0	6.38%	3004.1	6.21%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-8.751e-01	1.0000	34.0	2.64%	1222.5	2.53%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-8.663e-01	1.0000	34.0	2.64%	1224.6	2.53%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.587e-01	1.0000	83.0	6.45%	3047.6	6.30%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.579e-01	1.0000	78.0	6.07%	2861.0	5.91%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.539e-01	1.0000	91.0	7.08%	3347.8	6.92%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.538e-01	1.0000	107.0	8.32%	3944.2	8.15%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.296e-01	1.0000	38.0	2.95%	1381.7	2.85%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-8.290e-01	1.0000	43.0	3.34%	1567.2	3.24%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-8.072e-01	1.0000	102.0	7.93%	3776.3	7.80%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-8.053e-01	1.0000	33.0	2.57%	1201.9	2.48%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-8.040e-01	1.0000	196.0	15.24%	7298.3	15.08%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-8.010e-01	1.0000	3.0	0.23%	93.6	0.19%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-7.980e-01	1.0000	112.0	8.71%	4154.5	8.58%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-7.965e-01	1.0000	133.0	10.34%	4941.2	10.21%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-7.796e-01	1.0000	56.0	4.35%	2066.9	4.27%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-7.771e-01	1.0000	260.0	20.22%	9715.8	20.07%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.761e-01	1.0000	73.0	5.68%	2703.0	5.59%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.745e-01	1.0000	38.0	2.95%	1395.5	2.88%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-7.718e-01	1.0000	6.0	0.47%	205.2	0.42%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.717e-01	1.0000	109.0	8.48%	4053.2	8.37%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-7.619e-01	1.0000	19.0	1.48%	689.4	1.42%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.593e-01	1.0000	155.0	12.05%	5784.8	11.95%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-7.542e-01	1.0000	32.0	2.49%	1176.7	2.43%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-7.516e-01	1.0000	1.0	0.08%	24.7	0.05%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.448e-01	1.0000	765.0	59.49%	28728.0	59.36%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.416e-01	1.0000	5.0	0.39%	171.3	0.35%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-7.391e-01	1.0000	72.0	5.60%	2679.3	5.54%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-7.391e-01	1.0000	9.0	0.70%	320.9	0.66%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-7.386e-01	1.0000	23.0	1.79%	843.1	1.74%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.358e-01	1.0000	285.0	22.16%	10681.5	22.07%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-7.300e-01	1.0000	2.0	0.16%	61.8	0.13%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.227e-01	1.0000	1.0	0.08%	25.0	0.05%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.182e-01	1.0000	67.0	5.21%	2499.1	5.16%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-7.165e-01	1.0000	80.0	6.22%	2988.4	6.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.146e-01	1.0000	3.0	0.23%	99.1	0.20%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-7.137e-01	1.0000	85.0	6.61%	3177.6	6.57%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.129e-01	1.0000	161.0	12.52%	6034.0	12.47%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-7.091e-01	1.0000	13.0	1.01%	474.6	0.98%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.007e-01	1.0000	21.0	1.63%	776.3	1.60%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-6.989e-01	1.0000	47.0	3.65%	1754.9	3.63%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.985e-01	1.0000	10.0	0.78%	363.7	0.75%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.945e-01	1.0000	172.0	13.37%	6458.3	13.34%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-6.872e-01	1.0000	118.0	9.18%	4430.0	9.15%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.870e-01	1.0000	12.0	0.93%	440.0	0.91%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.850e-01	1.0000	19.0	1.48%	704.2	1.45%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.751e-01	1.0000	3.0	0.23%	102.5	0.21%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-6.665e-01	1.0000	131.0	10.19%	4930.5	10.19%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.466e-01	1.0000	42.0	3.27%	1582.5	3.27%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-6.445e-01	1.0000	109.0	8.48%	4112.9	8.50%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.417e-01	1.0000	218.0	16.95%	8223.7	16.99%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-6.391e-01	1.0000	54.0	4.20%	2038.2	4.21%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-6.366e-01	1.0000	101.0	7.85%	3814.7	7.88%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.301e-01	1.0000	28.0	2.18%	1057.8	2.19%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.201e-01	1.0000	82.0	6.38%	3104.5	6.41%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.192e-01	1.0000	161.0	12.52%	6088.7	12.58%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.145e-01	1.0000	729.0	56.69%	27484.8	56.79%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-5.916e-01	1.0000	3.0	0.23%	109.3	0.23%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.882e-01	1.0000	19.0	1.48%	725.2	1.50%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-5.854e-01	1.0000	184.0	14.31%	6978.4	14.42%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.819e-01	1.0000	4.0	0.31%	149.7	0.31%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-5.797e-01	1.0000	41.0	3.19%	1566.2	3.24%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.783e-01	1.0000	7.0	0.54%	266.3	0.55%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-5.745e-01	1.0000	125.0	9.72%	4754.5	9.82%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.660e-01	1.0000	25.0	1.94%	960.2	1.98%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-5.597e-01	1.0000	181.0	14.07%	6882.4	14.22%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-5.564e-01	1.0000	23.0	1.79%	886.8	1.83%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.540e-01	1.0000	71.0	5.52%	2718.0	5.62%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-5.537e-01	1.0000	204.0	15.86%	7756.7	16.03%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.505e-01	1.0000	47.0	3.65%	1805.5	3.73%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.446e-01	1.0000	13.0	1.01%	504.8	1.04%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-5.443e-01	1.0000	7.0	0.54%	271.5	0.56%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.369e-01	1.0000	111.0	8.63%	4245.6	8.77%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.285e-01	1.0000	3.0	0.23%	115.6	0.24%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.215e-01	1.0000	11.0	0.86%	431.1	0.89%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.187e-01	1.0000	3.0	0.23%	116.3	0.24%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-5.120e-01	1.0000	7.0	0.54%	276.3	0.57%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.116e-01	1.0000	183.0	14.23%	6992.7	14.45%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.113e-01	1.0000	4.0	0.31%	157.7	0.33%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-5.113e-01	1.0000	4.0	0.31%	157.2	0.32%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.033e-01	1.0000	5.0	0.39%	198.7	0.41%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.033e-01	1.0000	5.0	0.39%	198.7	0.41%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-4.985e-01	1.0000	122.0	9.49%	4686.6	9.68%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-4.891e-01	1.0000	55.0	4.28%	2136.2	4.41%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.819e-01	1.0000	23.0	1.79%	907.7	1.88%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.812e-01	1.0000	253.0	19.67%	9668.2	19.98%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-4.811e-01	1.0000	17.0	1.32%	675.0	1.39%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.749e-01	1.0000	5.0	0.39%	202.1	0.42%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-4.747e-01	1.0000	133.0	10.34%	5120.8	10.58%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.728e-01	1.0000	66.0	5.13%	2565.7	5.30%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.724e-01	1.0000	22.0	1.71%	871.9	1.80%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.677e-01	1.0000	29.0	2.26%	1144.5	2.36%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.647e-01	1.0000	162.0	12.60%	6230.6	12.87%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-4.624e-01	1.0000	22.0	1.71%	874.1	1.81%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-4.613e-01	1.0000	105.0	8.16%	4062.8	8.39%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-4.569e-01	1.0000	322.0	25.04%	12302.6	25.42%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-4.400e-01	1.0000	64.0	4.98%	2505.9	5.18%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.382e-01	1.0000	3.0	0.23%	125.4	0.26%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.345e-01	1.0000	89.0	6.92%	3467.2	7.16%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.294e-01	1.0000	148.0	11.51%	5724.5	11.83%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-4.275e-01	1.0000	85.0	6.61%	3318.3	6.86%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.202e-01	1.0000	54.0	4.20%	2130.2	4.40%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.166e-01	1.0000	14.0	1.09%	573.7	1.19%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.152e-01	1.0000	116.0	9.02%	4513.6	9.33%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-4.148e-01	1.0000	30.0	2.33%	1202.5	2.48%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.140e-01	1.0000	9.0	0.70%	374.9	0.77%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.096e-01	1.0000	55.0	4.28%	2174.1	4.49%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.023e-01	1.0000	99.0	7.70%	3871.9	8.00%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-3.974e-01	1.0000	49.0	3.81%	1948.4	4.03%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-3.964e-01	1.0000	82.0	6.38%	3222.1	6.66%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.940e-01	1.0000	260.0	20.22%	10016.1	20.70%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.913e-01	1.0000	151.0	11.74%	5869.9	12.13%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-3.901e-01	1.0000	21.0	1.63%	858.4	1.77%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-3.894e-01	1.0000	139.0	10.81%	5412.7	11.18%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-3.864e-01	1.0000	59.0	4.59%	2341.7	4.84%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.843e-01	1.0000	21.0	1.63%	861.0	1.78%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.772e-01	1.0000	384.0	29.86%	14735.0	30.45%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.769e-01	1.0000	10.0	0.78%	423.2	0.87%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.649e-01	1.0000	44.0	3.42%	1770.8	3.66%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-3.588e-01	1.0000	73.0	5.68%	2899.2	5.99%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.516e-01	1.0000	16.0	1.24%	672.7	1.39%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-3.506e-01	1.0000	234.0	18.20%	9073.1	18.75%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-3.485e-01	1.0000	40.0	3.11%	1622.5	3.35%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-3.469e-01	1.0000	41.0	3.19%	1662.5	3.44%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-3.428e-01	1.0000	180.0	14.00%	7021.1	14.51%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.389e-01	1.0000	2.0	0.16%	94.8	0.20%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.356e-01	1.0000	30.0	2.33%	1235.4	2.55%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-3.354e-01	1.0000	66.0	5.13%	2643.9	5.46%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.239e-01	1.0000	5.0	0.39%	228.4	0.47%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-3.228e-01	1.0000	156.0	12.13%	6122.0	12.65%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-3.198e-01	1.0000	182.0	14.15%	7121.4	14.71%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.180e-01	1.0000	103.0	8.01%	4088.9	8.45%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.172e-01	1.0000	6.0	0.47%	272.7	0.56%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-3.143e-01	1.0000	11.0	0.86%	481.3	0.99%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.142e-01	1.0000	30.0	2.33%	1245.7	2.57%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-3.131e-01	1.0000	80.0	6.22%	3202.3	6.62%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.127e-01	1.0000	54.0	4.20%	2190.4	4.53%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.102e-01	1.0000	60.0	4.67%	2426.4	5.01%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-3.073e-01	1.0000	100.0	7.78%	3981.5	8.23%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.065e-01	1.0000	80.0	6.22%	3208.0	6.63%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.035e-01	1.0000	280.0	21.77%	10880.1	22.48%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-3.025e-01	1.0000	35.0	2.72%	1449.1	2.99%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-3.014e-01	1.0000	19.0	1.48%	811.8	1.68%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.988e-01	1.0000	23.0	1.79%	973.9	2.01%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.980e-01	1.0000	1.0	0.08%	51.3	0.11%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.980e-01	1.0000	4.0	0.31%	190.7	0.39%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.965e-01	1.0000	17.0	1.32%	732.2	1.51%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.924e-01	1.0000	117.0	9.10%	4651.8	9.61%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.910e-01	1.0000	92.0	7.15%	3685.8	7.62%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.890e-01	1.0000	1.0	0.08%	52.4	0.11%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.868e-01	1.0000	19.0	1.48%	817.1	1.69%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.847e-01	1.0000	123.0	9.56%	4890.4	10.10%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.841e-01	1.0000	253.0	19.67%	9876.8	20.41%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.802e-01	1.0000	1.0	0.08%	53.6	0.11%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.800e-01	1.0000	25.0	1.94%	1062.3	2.19%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.737e-01	1.0000	13.0	1.01%	578.0	1.19%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.638e-01	1.0000	19.0	1.48%	827.3	1.71%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.599e-01	1.0000	10.0	0.78%	457.5	0.95%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.551e-01	1.0000	44.0	3.42%	1834.4	3.79%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.534e-01	1.0000	161.0	12.52%	6389.7	13.20%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.503e-01	1.0000	62.0	4.82%	2548.6	5.27%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.448e-01	1.0000	3.0	0.23%	156.6	0.32%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.394e-01	1.0000	108.0	8.40%	4355.3	9.00%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.368e-01	1.0000	6.0	0.47%	293.2	0.61%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.299e-01	1.0000	58.0	4.51%	2407.4	4.97%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-2.290e-01	1.0000	325.0	25.27%	12703.3	26.25%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.271e-01	1.0000	36.0	2.80%	1534.6	3.17%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.262e-01	1.0000	12.0	0.93%	554.0	1.14%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.218e-01	1.0000	257.0	19.98%	10118.8	20.91%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.134e-01	1.0000	78.0	6.07%	3211.0	6.63%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.115e-01	1.0000	2.0	0.16%	115.4	0.24%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.055e-01	1.0000	35.0	2.72%	1509.4	3.12%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.026e-01	1.0000	3.0	0.23%	166.8	0.34%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.025e-01	1.0000	5.0	0.39%	259.8	0.54%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.996e-01	1.0000	450.0	34.99%	17509.0	36.18%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.975e-01	1.0000	137.0	10.65%	5532.5	11.43%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.963e-01	1.0000	57.0	4.43%	2397.2	4.95%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.945e-01	1.0000	204.0	15.86%	8127.4	16.79%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.928e-01	1.0000	23.0	1.79%	1029.7	2.13%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.850e-01	1.0000	2.0	0.16%	121.9	0.25%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.788e-01	1.0000	34.0	2.64%	1489.5	3.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.781e-01	1.0000	10.0	0.78%	490.3	1.01%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.744e-01	1.0000	8.0	0.62%	404.2	0.84%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.707e-01	1.0000	3.0	0.23%	175.9	0.36%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.690e-01	1.0000	1.0	0.08%	70.9	0.15%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.673e-01	1.0000	117.0	9.10%	4795.7	9.91%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.663e-01	1.0000	23.0	1.79%	1047.4	2.16%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.633e-01	1.0000	11.0	0.86%	541.0	1.12%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.630e-01	1.0000	70.0	5.44%	2949.4	6.09%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.621e-01	1.0000	14.0	1.09%	672.0	1.39%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.551e-01	1.0000	12.0	0.93%	589.1	1.22%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.539e-01	1.0000	6.0	0.47%	323.4	0.67%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.505e-01	1.0000	1.0	0.08%	74.9	0.15%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.476e-01	1.0000	31.0	2.41%	1393.9	2.88%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.454e-01	1.0000	300.0	23.33%	11911.6	24.61%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.435e-01	1.0000	8.0	0.62%	419.5	0.87%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.434e-01	1.0000	18.0	1.40%	854.2	1.76%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.418e-01	1.0000	21.0	1.63%	982.6	2.03%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.371e-01	1.0000	42.0	3.27%	1854.5	3.83%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.351e-01	1.0000	7.0	0.54%	378.6	0.78%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.319e-01	1.0000	58.0	4.51%	2508.9	5.18%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.312e-01	1.0000	19.0	1.48%	906.2	1.87%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.311e-01	1.0000	241.0	18.74%	9676.3	19.99%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.268e-01	1.0000	1.0	0.08%	80.8	0.17%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.256e-01	1.0000	47.0	3.65%	2071.3	4.28%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.234e-01	1.0000	4.0	0.31%	242.2	0.50%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.207e-01	1.0000	43.0	3.34%	1914.9	3.96%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.135e-01	1.0000	133.0	10.34%	5516.8	11.40%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.066e-01	1.0000	82.0	6.38%	3510.7	7.25%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.041e-01	1.0000	9.0	0.70%	489.7	1.01%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-9.849e-02	1.0000	14.0	1.09%	718.6	1.48%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-9.573e-02	1.0000	1.0	0.08%	90.3	0.19%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-9.337e-02	1.0000	80.0	6.22%	3455.2	7.14%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-9.021e-02	1.0000	9.0	0.70%	500.7	1.03%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-8.335e-02	1.0000	9.0	0.70%	507.0	1.05%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.282e-02	1.0000	29.0	2.26%	1384.0	2.86%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-8.119e-02	1.0000	37.0	2.88%	1722.6	3.56%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-7.763e-02	1.0000	176.0	13.69%	7296.2	15.08%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-7.252e-02	1.0000	1.0	0.08%	101.0	0.21%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.088e-02	1.0000	32.0	2.49%	1529.2	3.16%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.495e-02	1.0000	1.0	0.08%	104.7	0.22%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.314e-02	1.0000	233.0	18.12%	9575.3	19.78%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.982e-02	1.0000	61.0	4.74%	2760.9	5.70%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-5.951e-02	1.0000	24.0	1.87%	1206.9	2.49%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-5.819e-02	1.0000	1.0	0.08%	108.0	0.22%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.276e-02	1.0000	17.0	1.32%	909.1	1.88%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-5.207e-02	1.0000	28.0	2.18%	1394.8	2.88%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-5.103e-02	1.0000	41.0	3.19%	1951.8	4.03%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.055e-02	1.0000	61.0	4.74%	2786.2	5.76%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.986e-02	1.0000	26.0	2.02%	1312.4	2.71%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-4.506e-02	1.0000	2.0	0.16%	184.8	0.38%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.255e-02	1.0000	83.0	6.45%	3716.9	7.68%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.002e-02	1.0000	125.0	9.72%	5424.3	11.21%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.971e-02	1.0000	1.0	0.08%	122.1	0.25%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.197e-02	1.0000	1.0	0.08%	130.8	0.27%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-2.925e-02	1.0000	55.0	4.28%	2615.7	5.40%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.746e-02	1.0000	19.0	1.48%	1059.1	2.19%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.610e-02	1.0000	16.0	1.24%	925.2	1.91%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.096e-02	1.0000	56.0	4.35%	2702.3	5.58%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.073e-02	1.0000	107.0	8.32%	4818.0	9.95%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.545e-02	1.0000	28.0	2.18%	1521.1	3.14%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.401e-02	1.0000	2.0	0.16%	235.8	0.49%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.506e-03	1.0000	46.0	3.58%	2369.1	4.90%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-8.410e-04	1.0000	18.0	1.40%	1283.4	2.65%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.350e-04	1.0000	4.0	0.31%	519.9	1.07%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	23.5	0.05%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	43.6	0.09%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	17.9	0.04%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	17.7	0.04%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	3.1	0.01%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	14.2	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	16.6	0.03%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	6.3	0.01%