Information for 1-TCGCCATATT (Motif 1)

A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T C G T A A C G T A C T G A C T G A G T C A C T G C G T A
p-value:1e-28
log p-value:-6.535e+01
Information Content per bp:1.979
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif6.62%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets106.6 +/- 52.3bp
Average Position of motif in Background153.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TCGCCATATT-
GCNGCCATCTTG
 A C G T A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TCGCCATATT-
GCCGCCATCTTG
 A C G T A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TCGCCATATT--
NNTNNCAATATTAG
 A C G T A C G T A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TCGCCATATT--
NNTNNCAATATTAG
 A C G T A C G T A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCGCCATATT
GTCCGCCATTA-
 A C G T A C G T A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

NEUROD2/MA0668.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCGCCATATT--
--GCCATATGGT
 A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T G A C A T G C C T G A A G C T T G C A A G C T A C T G A C T G G A C T

Neurog1/MA0623.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCGCCATATT--
--ACCATATGGT
 A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A T C G G A C T

Atoh1/MA0461.2/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCGCCATATT--
--ANCATATGTT
 A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T

ZBED1/MA0749.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCGCCATATT
CTATCGCGACATA
 A C G T A C G T A C G T A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T
G T A C C G A T T C G A G A C T A G T C T C A G G A T C T A C G T C G A G A T C G C T A A C G T C T G A

NEUROG2/MA0669.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCGCCATATT--
--GACATATGTT
 A C G T A G T C A C T G G T A C A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T