Information for 3-GTCCTACAGTGT (Motif 3)

A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T
Reverse Opposite:
G T C A A G T C C G T A A G T C A C G T A C T G C G A T C G T A A C T G A C T G C G T A A G T C
p-value:1e-22
log p-value:-5.288e+01
Information Content per bp:1.927
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif6.62%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets90.4 +/- 56.3bp
Average Position of motif in Background134.6 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)2.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GTCCTACAGTGT
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTACAGTGT--
RGMCCTACTRTGTGC
 A C G T A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T A C G T
C T A G T C A G T G C A A G T C A G T C A G C T C G T A G T A C A G C T T C G A A G C T A T C G A G C T C T A G G A T C

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GTCCTACAGTGT
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GTCCTACAGTGT-
---CTYRAGTGSY
 A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PH0077.1_Hoxd12/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTCCTACAGTGT-
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTCCTACAGTGT
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GTCCTACAGTGT-
---BTBRAGTGSN
 A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTCCTACAGTGT
---NTCAAGTGG
 A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTCCTACAGTGT-----
NTNNTTAAGTGGNTNAN
 A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GTCCTACAGTGT--
----TTRAGTGSYK
 A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T