Information for 6-CAAGTGGATGTT (Motif 5)

A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C C G T A A C G T G T A C A G T C C G T A A G T C A C G T A C G T A C T G
p-value:1e-15
log p-value:-3.496e+01
Information Content per bp:1.969
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif4.41%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets96.3 +/- 71.6bp
Average Position of motif in Background95.4 +/- 76.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAAGTGGATGTT
NTCAAGTGGN----
 A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGTGGATGTT
AAATTCAAGTGGNTTN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGTGGATGTT
AANTTCAAGTGGCTTN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAAGTGGATGTT
NTCAAGTGG-----
 A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGTGGATGTT
AATNTTAAGTGGNTNN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CAAGTGGATGTT
NANTTTCAAGTGGTTAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAAGTGGATGTT
---GTGGAT---
 A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGTGGATGTT
AATTTCAAGTGGCTTN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAAGTGGATGTT
TTRAGTGSYK---
 A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGTGGATGTT
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G