Information for 12-TGGCTAACTA (Motif 16)

C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A
Reverse Opposite:
A C G T T G C A C T A G C G A T G A C T C T G A A T C G G T A C A G T C G T C A
p-value:1e-4
log p-value:-1.059e+01
Information Content per bp:1.783
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.64%
Number of Background Sequences with motif663.1
Percentage of Background Sequences with motif1.41%
Average Position of motif in Targets91.3 +/- 61.9bp
Average Position of motif in Background104.2 +/- 56.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGGCTAACTA--
--GTTAACTAGN
 C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A A C G T A C G T
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGGCTAACTA-----
AGCTGTTAACTAGCCGT
 A C G T A C G T C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A A C G T A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PH0167.1_Tcf1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGGCTAACTA----
CCTTAGTTAACTAAAAT
 A C G T A C G T A C G T C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A A C G T A C G T A C G T A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGGCTAACTA----
ACTTAGTTAACTAAAAA
 A C G T A C G T A C G T C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A A C G T A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

PH0040.1_Hmbox1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTAACTA------
GANGTTAACTAGTTTNN
 A C G T C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGGCTAACTA-
-TGCTGACTCA
 C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A A C G T
A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

PB0041.1_Mafb_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGGCTAACTA---
AAATTTGCTGACTTAGA
 A C G T A C G T A C G T A C G T C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A A C G T A C G T A C G T
G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C

PH0131.1_Pax4/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTAACTA-----
NNGNGCTAATTAGNTNA
 A C G T A C G T C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A A C G T A C G T A C G T A C G T A C G T
C A T G G A C T A T C G T C A G C T A G A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G C A T A G C T A T G C C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGCTAACTA
TWGTCTGV---
 A C G T C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGGCTAACTA
--NCTAATTA
 C A G T C T A G C A T G A T G C G A C T C T G A G C T A A G T C A C G T G T C A
A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A