Information for 9-GACATTAS (Motif 20)

A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C
Reverse Opposite:
T A C G A C G T C G T A G T C A A C G T T A C G A C G T A G T C
p-value:1e-3
log p-value:-8.345e+00
Information Content per bp:1.843
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif8.73%
Number of Background Sequences with motif2540.1
Percentage of Background Sequences with motif5.42%
Average Position of motif in Targets99.6 +/- 56.8bp
Average Position of motif in Background98.7 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARX1/MA0875.1/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GACATTAS
GCAATTAG
 A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

BSX/MA0876.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GACATTAS
CCAATTAA
 A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GACATTAS-
-YCATTAMC
 A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C A C G T
A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

HOXB3/MA0903.1/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GACATTAS-
ACTAATTAGC
 A C G T A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C A C G T
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GACATTAS-
GGCCATTAAC
 A C G T A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C A C G T
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

HOXB2/MA0902.1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GACATTAS-
AGTAATTAAC
 A C G T A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C A C G T
T C G A T A C G G A C T T G C A T C G A A C G T G A C T G C T A T C G A T G A C

PDX1/MA0132.2/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GACATTAS
GTAATTAG
 A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C
T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G

EVX2/MA0888.1/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GACATTAS-
GGTAATTAGC
 A C G T A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C A C G T
T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

HOXA2/MA0900.1/Jaspar

Match Rank:9
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GACATTAS-
CCTAATTACC
 A C G T A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C A C G T
T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GACATTAS
BCMATTAG
 A C T G G T C A A T G C C G T A A C G T A C G T C G T A A T G C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G