Information for 20-GACAGASACACA (Motif 26)

A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
Reverse Opposite:
C G A T T A C G A C G T A T C G A C G T A T C G A C G T A T G C A C G T A T C G A C G T A G T C
p-value:1e-2
log p-value:-6.332e+00
Information Content per bp:1.844
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.49%
Number of Background Sequences with motif838.9
Percentage of Background Sequences with motif1.79%
Average Position of motif in Targets107.5 +/- 56.1bp
Average Position of motif in Background102.9 +/- 82.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)2.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GACAGASACACA
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GACAGASACACA
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GACAGASACACA
TTGACAG-------
 A C G T A C G T A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GACAGASACACA
TTGACAGC------
 A C G T A C G T A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GACAGASACACA
-CCAGACRSVB-
 A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GACAGASACACA
RHHCAGAGAGGB-
 A C G T A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GACAGASACACA
TTGACAGG------
 A C G T A C G T A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GACAGASACACA
-CCAGACAG---
 A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

PBX2/MA1113.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GACAGASACACA
GTGATTGACAGG--
 A C G T A C G T A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
T C A G C G A T C A T G C T G A A C G T C A G T A C T G C T G A A G T C C T G A A T C G T A C G A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GACAGASACACA
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C T G C G T A A T G C C G T A A T C G C G T A T A G C C G T A A T G C C G T A A T G C C G T A
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C