Information for 21-CTGCCTCTCTGC (Motif 28)

A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G C G T A A C T G C G T A C T A G A T C G A G T C C G T A A C T G
p-value:1e-2
log p-value:-5.192e+00
Information Content per bp:1.970
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif24.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets96.3 +/- 50.4bp
Average Position of motif in Background94.6 +/- 93.6bp
Strand Bias (log2 ratio + to - strand density)-4.3
Multiplicity (# of sites on avg that occur together)7.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CTGCCTCTCTGC--
--VCCTCTCTGDDY
 A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C G T
A C G T A C G T T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTGCCTCTCTGC
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGCCTCTCTGC--
CTGGCAGNCTGCCA
 A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCTCTCTGC
CACTTCCTCT----
 A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C
A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T A C G T A C G T A C G T A C G T

PBX3/MA1114.1/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTGCCTCTCTGC-
NNNCCTGTCACTCANNN
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTGCCTCTCTGC
--VBSYGTCTGG
 A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CTGCCTCTCTGC----
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTGCCTCTCTGC
NCTGTCAATCAN-
 A C G T A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTGCCTCTCTGC-
CTGTCTGTCACCT
 A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCTCTCTGC
CACTTCCYCTTT--
 A C G T A C G T A G T C A C G T A C T G A T G C A G T C A C G T A G T C A C G T A G T C A C G T A C T G A G T C
T A G C T C G A A T G C A C G T A C G T A G T C A G T C A G C T G A T C G C A T G A C T G C A T A C G T A C G T