Information for 9-TCGTCAAGTGGA (Motif 8)

A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C G T A A G T C A C G T A C G T A C T G C G T A A G T C A C T G C G T A
p-value:1e-14
log p-value:-3.339e+01
Information Content per bp:1.530
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets119.9 +/- 58.0bp
Average Position of motif in Background117.7 +/- 50.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:TCGTCAAGTGGA
--NTCAAGTGGN
 A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TCGTCAAGTGGA
--NTCAAGTGG-
 A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A
A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TCGTCAAGTGGA---
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TCGTCAAGTGGA---
AANTTCAAGTGGCTTN
 A C G T A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TCGTCAAGTGGA----
NTNNTTAAGTGGNTNAN
 A C G T A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TCGTCAAGTGGA---
AATTTCAAGTGGCTTN
 A C G T A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TCGTCAAGTGGA
--BTBRAGTGSN
 A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TCGTCAAGTGGA---
AAATTCAAGTGGNTTN
 A C G T A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCGTCAAGTGGA----
NTNNTTAAGTGGTTANN
 A C G T A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCGTCAAGTGGA
--GTCACGTGGM
 A C G T A G T C A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A
A C G T A C G T T C A G C A G T A G T C C G T A A T G C T C A G G C A T A C T G A C T G T G A C