Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 47320)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47613)	% of Background Sequences with Motif
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-13	-3.169e+01	0.0000	4273.0	9.03%	3842.4	8.07%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-7	-1.650e+01	0.0000	7148.0	15.11%	6790.4	14.26%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-6	-1.436e+01	0.0001	4820.0	10.19%	4537.9	9.53%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-5	-1.241e+01	0.0004	7119.0	15.05%	6823.2	14.33%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-4	-1.021e+01	0.0032	4456.0	9.42%	4237.4	8.90%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-4	-9.992e+00	0.0033	2458.0	5.20%	2289.7	4.81%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-4	-9.787e+00	0.0034	1415.0	2.99%	1285.5	2.70%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-3	-9.128e+00	0.0058	1509.0	3.19%	1381.6	2.90%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-3	-9.078e+00	0.0058	2662.0	5.63%	2498.5	5.25%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-3	-9.011e+00	0.0058	2733.0	5.78%	2568.2	5.39%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-3	-8.925e+00	0.0058	1236.0	2.61%	1121.0	2.35%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-3	-7.625e+00	0.0174	22705.0	48.01%	22500.7	47.25%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-3	-7.431e+00	0.0195	2728.0	5.77%	2584.9	5.43%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-7.055e+00	0.0264	12.0	0.03%	4.9	0.01%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-6.655e+00	0.0367	938.0	1.98%	855.6	1.80%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-6.602e+00	0.0367	7105.0	15.02%	6921.5	14.53%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-2	-6.545e+00	0.0367	775.0	1.64%	700.7	1.47%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-6.517e+00	0.0367	635.0	1.34%	567.4	1.19%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-6.499e+00	0.0367	198.0	0.42%	160.1	0.34%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-6.439e+00	0.0367	13239.0	27.99%	13042.0	27.39%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-2	-6.412e+00	0.0367	13799.0	29.18%	13602.5	28.56%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-2	-6.135e+00	0.0421	213.0	0.45%	175.9	0.37%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-5.794e+00	0.0567	50.0	0.11%	33.3	0.07%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-2	-5.729e+00	0.0579	15397.0	32.56%	15224.0	31.97%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.556e+00	0.0662	1388.0	2.93%	1301.3	2.73%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-2	-5.511e+00	0.0665	197.0	0.42%	163.4	0.34%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-5.384e+00	0.0728	2133.0	4.51%	2031.8	4.27%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-5.355e+00	0.0728	6905.0	14.60%	6753.7	14.18%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-5.199e+00	0.0815	7357.0	15.56%	7207.4	15.14%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-4.765e+00	0.1216	1041.0	2.20%	973.9	2.05%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-2	-4.752e+00	0.1216	4515.0	9.55%	4394.1	9.23%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-2	-4.744e+00	0.1216	8226.0	17.39%	8086.7	16.98%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-4.733e+00	0.1216	1716.0	3.63%	1632.0	3.43%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-4.611e+00	0.1251	1425.0	3.01%	1349.1	2.83%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-4.539e+00	0.1306	1424.0	3.01%	1349.6	2.83%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-4.532e+00	0.1306	292.0	0.62%	256.3	0.54%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-4.443e+00	0.1360	1732.0	3.66%	1652.7	3.47%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.420e+00	0.1360	1597.0	3.38%	1520.8	3.19%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-4.324e+00	0.1454	1618.0	3.42%	1542.9	3.24%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-4.285e+00	0.1473	3908.0	8.26%	3803.2	7.99%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-4.207e+00	0.1555	17374.0	36.74%	17264.8	36.26%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.207e+00	0.1555	2269.0	4.80%	2184.1	4.59%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-4.155e+00	0.1561	1442.0	3.05%	1372.1	2.88%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-4.139e+00	0.1561	738.0	1.56%	686.1	1.44%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-4.129e+00	0.1561	6477.0	13.70%	6361.3	13.36%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-4.017e+00	0.1676	3160.0	6.68%	3068.7	6.44%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-4.000e+00	0.1676	6442.0	13.62%	6330.5	13.29%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-3.995e+00	0.1676	2569.0	5.43%	2484.1	5.22%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-3.836e+00	0.1884	3158.0	6.68%	3070.9	6.45%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.754e+00	0.2005	1095.0	2.32%	1038.2	2.18%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.709e+00	0.2055	4191.0	8.86%	4098.3	8.61%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.587e+00	0.2278	10419.0	22.03%	10317.8	21.67%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-3.554e+00	0.2309	2054.0	4.34%	1984.2	4.17%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-1	-3.548e+00	0.2309	8869.0	18.75%	8768.8	18.41%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-3.485e+00	0.2386	17875.0	37.80%	17799.4	37.38%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-3.484e+00	0.2386	353.0	0.75%	321.2	0.67%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-1	-3.483e+00	0.2386	287.0	0.61%	258.3	0.54%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.430e+00	0.2389	363.0	0.77%	331.7	0.70%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.357e+00	0.2527	6192.0	13.09%	6101.4	12.81%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-1	-3.324e+00	0.2569	4692.0	9.92%	4608.0	9.68%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-3.324e+00	0.2569	1200.0	2.54%	1147.7	2.41%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-3.288e+00	0.2576	3271.0	6.92%	3195.1	6.71%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.258e+00	0.2614	853.0	1.80%	808.7	1.70%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.228e+00	0.2650	2936.0	6.21%	2864.4	6.02%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-3.119e+00	0.2912	11915.0	25.19%	11835.9	24.85%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.087e+00	0.2960	2997.0	6.34%	2928.3	6.15%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-2.999e+00	0.3183	1878.0	3.97%	1821.7	3.83%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.960e+00	0.3262	3028.0	6.40%	2962.5	6.22%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.880e+00	0.3482	150.0	0.32%	132.2	0.28%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.870e+00	0.3482	151.0	0.32%	133.6	0.28%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.813e+00	0.3617	6133.0	12.97%	6061.6	12.73%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-1	-2.724e+00	0.3901	6639.0	14.04%	6570.2	13.80%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.722e+00	0.3901	4597.0	9.72%	4531.0	9.51%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.713e+00	0.3901	19.0	0.04%	13.7	0.03%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-1	-2.703e+00	0.3901	3601.0	7.61%	3539.9	7.43%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-2.668e+00	0.3909	916.0	1.94%	878.4	1.84%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-2.664e+00	0.3909	9114.0	19.27%	9050.0	19.00%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.635e+00	0.3936	1292.0	2.73%	1249.1	2.62%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.620e+00	0.3943	1024.0	2.17%	985.2	2.07%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.602e+00	0.3966	2765.0	5.85%	2710.4	5.69%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.585e+00	0.3983	2670.0	5.65%	2616.0	5.49%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-1	-2.572e+00	0.3988	3337.0	7.06%	3280.7	6.89%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.556e+00	0.4001	28.0	0.06%	21.1	0.04%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.541e+00	0.4016	4649.0	9.83%	4589.4	9.64%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.523e+00	0.4039	3203.0	6.77%	3148.7	6.61%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.467e+00	0.4223	992.0	2.10%	956.3	2.01%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-1	-2.463e+00	0.4223	10363.0	21.91%	10310.8	21.65%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-2.437e+00	0.4251	1892.0	4.00%	1847.7	3.88%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.382e+00	0.4443	4402.0	9.31%	4348.5	9.13%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.287e+00	0.4830	2707.0	5.72%	2661.2	5.59%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.275e+00	0.4837	1733.0	3.66%	1693.5	3.56%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.261e+00	0.4849	8691.0	18.38%	8644.8	18.15%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-2.196e+00	0.5122	2018.0	4.27%	1978.2	4.15%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.181e+00	0.5144	182.0	0.38%	168.0	0.35%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-2.169e+00	0.5150	1528.0	3.23%	1492.2	3.13%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-2.154e+00	0.5172	4737.0	10.02%	4691.8	9.85%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.145e+00	0.5172	6545.0	13.84%	6500.6	13.65%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.139e+00	0.5172	3553.0	7.51%	3509.6	7.37%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.130e+00	0.5172	3721.0	7.87%	3677.9	7.72%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-2.119e+00	0.5172	8240.0	17.42%	8199.7	17.22%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.090e+00	0.5241	6123.0	12.95%	6080.4	12.77%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-2.069e+00	0.5298	17324.0	36.63%	17322.9	36.38%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.069e+00	0.5298	311.0	0.66%	293.5	0.62%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-2.057e+00	0.5298	210.0	0.44%	195.3	0.41%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-2.046e+00	0.5298	11310.0	23.91%	11282.4	23.69%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.010e+00	0.5408	2475.0	5.23%	2439.0	5.12%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.996e+00	0.5434	5953.0	12.59%	5915.0	12.42%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.988e+00	0.5434	5595.0	11.83%	5556.4	11.67%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.983e+00	0.5434	231.0	0.49%	216.1	0.45%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.972e+00	0.5434	7632.0	16.14%	7597.0	15.95%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.961e+00	0.5434	1353.0	2.86%	1323.2	2.78%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.955e+00	0.5434	1521.0	3.22%	1490.3	3.13%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.952e+00	0.5434	321.0	0.68%	304.9	0.64%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.950e+00	0.5434	2143.0	4.53%	2109.6	4.43%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.942e+00	0.5434	372.0	0.79%	354.7	0.74%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.937e+00	0.5434	179.0	0.38%	166.5	0.35%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.924e+00	0.5434	11792.0	24.93%	11773.1	24.72%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.912e+00	0.5434	2163.0	4.57%	2130.9	4.47%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.880e+00	0.5488	9150.0	19.35%	9124.5	19.16%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.801e+00	0.5891	57.0	0.12%	50.1	0.11%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.783e+00	0.5948	189.0	0.40%	177.7	0.37%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.748e+00	0.6106	1181.0	2.50%	1157.1	2.43%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.748e+00	0.6106	4930.0	10.42%	4901.3	10.29%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.736e+00	0.6106	2871.0	6.07%	2842.5	5.97%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.704e+00	0.6229	503.0	1.06%	486.9	1.02%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.695e+00	0.6234	689.0	1.46%	670.2	1.41%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.681e+00	0.6278	5482.0	11.59%	5457.5	11.46%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.678e+00	0.6278	3001.0	6.35%	2974.3	6.25%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.658e+00	0.6320	1028.0	2.17%	1007.3	2.12%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.652e+00	0.6320	2895.0	6.12%	2869.1	6.03%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.649e+00	0.6320	13611.0	28.78%	13618.5	28.60%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.644e+00	0.6320	1786.0	3.78%	1762.2	3.70%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.640e+00	0.6320	7722.0	16.33%	7705.3	16.18%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.626e+00	0.6320	5144.0	10.88%	5121.8	10.76%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.569e+00	0.6601	1026.0	2.17%	1007.1	2.11%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.546e+00	0.6706	2568.0	5.43%	2546.2	5.35%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.544e+00	0.6706	6973.0	14.74%	6959.5	14.61%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.539e+00	0.6706	11406.0	24.12%	11410.3	23.96%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.527e+00	0.6706	701.0	1.48%	685.5	1.44%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.496e+00	0.6848	531.0	1.12%	517.9	1.09%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.453e+00	0.7101	502.0	1.06%	490.0	1.03%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.444e+00	0.7113	1843.0	3.90%	1825.4	3.83%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.410e+00	0.7306	470.0	0.99%	458.6	0.96%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.385e+00	0.7439	9305.0	19.67%	9310.1	19.55%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.381e+00	0.7439	2099.0	4.44%	2083.8	4.38%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.348e+00	0.7614	3555.0	7.52%	3542.2	7.44%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.336e+00	0.7656	6349.0	13.42%	6345.9	13.33%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.328e+00	0.7663	295.0	0.62%	286.3	0.60%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.313e+00	0.7724	4116.0	8.70%	4106.2	8.62%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.313e+00	0.7724	10942.0	23.14%	10960.4	23.02%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.309e+00	0.7724	5638.0	11.92%	5633.8	11.83%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.289e+00	0.7756	5871.0	12.41%	5868.3	12.32%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.289e+00	0.7756	481.0	1.02%	471.5	0.99%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.271e+00	0.7800	275.0	0.58%	267.4	0.56%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.259e+00	0.7842	3477.0	7.35%	3469.0	7.28%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.251e+00	0.7850	2900.0	6.13%	2890.9	6.07%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.249e+00	0.7850	957.0	2.02%	946.4	1.99%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.244e+00	0.7850	5422.0	11.46%	5420.5	11.38%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.231e+00	0.7863	5478.0	11.58%	5477.6	11.50%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-1.203e+00	0.8031	3585.0	7.58%	3579.1	7.52%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.202e+00	0.8031	5296.0	11.20%	5296.9	11.12%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.201e+00	0.8031	5286.0	11.18%	5286.2	11.10%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.191e+00	0.8031	4019.0	8.50%	4015.1	8.43%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.190e+00	0.8031	442.0	0.93%	434.5	0.91%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.182e+00	0.8031	6439.0	13.61%	6445.7	13.54%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.172e+00	0.8031	8832.0	18.67%	8850.6	18.59%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.170e+00	0.8031	3990.0	8.44%	3987.9	8.37%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.153e+00	0.8043	4011.0	8.48%	4009.2	8.42%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.148e+00	0.8043	8476.0	17.92%	8494.5	17.84%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-1.125e+00	0.8172	3874.0	8.19%	3873.5	8.13%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.105e+00	0.8290	338.0	0.71%	332.1	0.70%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.102e+00	0.8290	1173.0	2.48%	1166.4	2.45%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.101e+00	0.8290	804.0	1.70%	797.7	1.68%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.100e+00	0.8290	1066.0	2.25%	1059.1	2.22%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.100e+00	0.8290	10954.0	23.16%	10989.3	23.08%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.057e+00	0.8453	16011.0	33.85%	16080.2	33.77%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.053e+00	0.8453	1876.0	3.97%	1872.9	3.93%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.050e+00	0.8453	320.0	0.68%	315.6	0.66%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.039e+00	0.8460	1179.0	2.49%	1174.6	2.47%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.031e+00	0.8481	2240.0	4.74%	2238.7	4.70%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.021e+00	0.8519	2682.0	5.67%	2682.3	5.63%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.006e+00	0.8601	4165.0	8.81%	4172.9	8.76%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-9.924e-01	0.8669	3078.0	6.51%	3081.9	6.47%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.835e-01	0.8700	1252.0	2.65%	1249.9	2.62%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.822e-01	0.8700	642.0	1.36%	638.6	1.34%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-9.803e-01	0.8700	17627.0	37.27%	17714.8	37.20%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-9.710e-01	0.8700	7233.0	15.29%	7258.9	15.24%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.626e-01	0.8700	5238.0	11.08%	5253.4	11.03%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.497e-01	0.8760	1190.0	2.52%	1188.6	2.50%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-9.475e-01	0.8760	728.0	1.54%	725.8	1.52%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-9.404e-01	0.8760	1693.0	3.58%	1693.9	3.56%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.366e-01	0.8760	2165.0	4.58%	2167.1	4.55%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.119e-01	0.8909	2575.0	5.44%	2580.9	5.42%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.023e-01	0.8949	7660.0	16.20%	7693.4	16.16%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-8.707e-01	0.9189	3512.0	7.43%	3524.2	7.40%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-8.413e-01	0.9415	1643.0	3.47%	1647.2	3.46%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.257e-01	0.9514	610.0	1.29%	610.4	1.28%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-8.229e-01	0.9514	1680.0	3.55%	1685.7	3.54%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-8.131e-01	0.9538	4428.0	9.36%	4449.5	9.34%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-8.101e-01	0.9538	1569.0	3.32%	1574.0	3.31%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-8.100e-01	0.9538	63.0	0.13%	62.2	0.13%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.071e-01	0.9538	87.0	0.18%	86.4	0.18%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.972e-01	0.9538	1271.0	2.69%	1276.0	2.68%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.831e-01	0.9588	3084.0	6.52%	3100.0	6.51%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-7.343e-01	1.0000	3068.0	6.49%	3086.1	6.48%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-7.320e-01	1.0000	2890.0	6.11%	2907.4	6.11%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.255e-01	1.0000	110.0	0.23%	110.2	0.23%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-7.225e-01	1.0000	617.0	1.30%	620.9	1.30%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.205e-01	1.0000	768.0	1.62%	772.7	1.62%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-7.033e-01	1.0000	222.0	0.47%	223.3	0.47%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.920e-01	1.0000	1788.0	3.78%	1800.6	3.78%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.708e-01	1.0000	403.0	0.85%	406.9	0.85%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.563e-01	1.0000	4001.0	8.46%	4031.9	8.47%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.528e-01	1.0000	721.0	1.52%	728.0	1.53%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-6.484e-01	1.0000	4466.0	9.44%	4500.5	9.45%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.375e-01	1.0000	2190.0	4.63%	2208.6	4.64%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.375e-01	1.0000	3391.0	7.17%	3418.6	7.18%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.352e-01	1.0000	25956.0	54.88%	26142.0	54.90%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.322e-01	1.0000	4551.0	9.62%	4587.5	9.63%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.294e-01	1.0000	5470.0	11.57%	5513.3	11.58%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.001e-01	1.0000	3280.0	6.94%	3309.4	6.95%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.858e-01	1.0000	888.0	1.88%	898.6	1.89%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.770e-01	1.0000	263.0	0.56%	267.1	0.56%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-5.693e-01	1.0000	169.0	0.36%	172.1	0.36%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.600e-01	1.0000	678.0	1.43%	687.8	1.44%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.590e-01	1.0000	1185.0	2.51%	1199.6	2.52%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.487e-01	1.0000	2797.0	5.91%	2826.6	5.94%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-5.482e-01	1.0000	6739.0	14.25%	6800.5	14.28%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.467e-01	1.0000	16262.0	34.38%	16394.4	34.43%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.424e-01	1.0000	803.0	1.70%	814.9	1.71%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-5.377e-01	1.0000	2700.0	5.71%	2729.4	5.73%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.361e-01	1.0000	193.0	0.41%	197.3	0.41%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.248e-01	1.0000	3617.0	7.65%	3655.5	7.68%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.140e-01	1.0000	107.0	0.23%	111.0	0.23%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-5.030e-01	1.0000	151.0	0.32%	155.2	0.33%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.943e-01	1.0000	3981.0	8.42%	4025.8	8.45%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.829e-01	1.0000	242.0	0.51%	248.8	0.52%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-4.811e-01	1.0000	368.0	0.78%	376.3	0.79%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.803e-01	1.0000	662.0	1.40%	674.7	1.42%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-4.767e-01	1.0000	15812.0	33.43%	15952.9	33.50%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.601e-01	1.0000	2573.0	5.44%	2607.8	5.48%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.537e-01	1.0000	1476.0	3.12%	1499.8	3.15%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.510e-01	1.0000	3310.0	7.00%	3352.4	7.04%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-4.488e-01	1.0000	636.0	1.34%	649.9	1.36%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.477e-01	1.0000	9483.0	20.05%	9579.3	20.12%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.307e-01	1.0000	1781.0	3.77%	1809.6	3.80%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-4.294e-01	1.0000	15509.0	32.79%	15655.7	32.88%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-4.291e-01	1.0000	5091.0	10.76%	5152.0	10.82%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-4.280e-01	1.0000	4536.0	9.59%	4592.1	9.64%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.243e-01	1.0000	6134.0	12.97%	6205.5	13.03%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-4.199e-01	1.0000	3307.0	6.99%	3352.4	7.04%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-4.168e-01	1.0000	16666.0	35.24%	16823.5	35.33%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-4.107e-01	1.0000	244.0	0.52%	252.4	0.53%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.071e-01	1.0000	711.0	1.50%	727.1	1.53%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.883e-01	1.0000	2099.0	4.44%	2134.9	4.48%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-3.847e-01	1.0000	3629.0	7.67%	3681.6	7.73%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-3.821e-01	1.0000	1721.0	3.64%	1753.0	3.68%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-3.708e-01	1.0000	119.0	0.25%	125.2	0.26%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.666e-01	1.0000	320.0	0.68%	331.5	0.70%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.630e-01	1.0000	3305.0	6.99%	3356.7	7.05%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.523e-01	1.0000	1922.0	4.06%	1958.2	4.11%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-3.508e-01	1.0000	2828.0	5.98%	2875.2	6.04%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.318e-01	1.0000	265.0	0.56%	277.0	0.58%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.278e-01	1.0000	389.0	0.82%	403.3	0.85%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.215e-01	1.0000	520.0	1.10%	537.1	1.13%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.215e-01	1.0000	520.0	1.10%	537.1	1.13%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-3.198e-01	1.0000	1025.0	2.17%	1051.1	2.21%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-3.167e-01	1.0000	4805.0	10.16%	4878.0	10.24%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.120e-01	1.0000	1179.0	2.49%	1208.9	2.54%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.109e-01	1.0000	4632.0	9.79%	4704.7	9.88%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.105e-01	1.0000	1236.0	2.61%	1266.3	2.66%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.985e-01	1.0000	1567.0	3.31%	1603.9	3.37%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-2.983e-01	1.0000	3410.0	7.21%	3470.8	7.29%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.982e-01	1.0000	1237.0	2.62%	1268.9	2.66%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.960e-01	1.0000	757.0	1.60%	780.1	1.64%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.926e-01	1.0000	3516.0	7.43%	3578.0	7.51%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.909e-01	1.0000	321.0	0.68%	335.9	0.71%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.903e-01	1.0000	4991.0	10.55%	5070.3	10.65%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.755e-01	1.0000	1243.0	2.63%	1276.1	2.68%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.669e-01	1.0000	2537.0	5.36%	2590.9	5.44%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.669e-01	1.0000	522.0	1.10%	543.0	1.14%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.657e-01	1.0000	354.0	0.75%	370.8	0.78%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.635e-01	1.0000	1546.0	3.27%	1585.1	3.33%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.619e-01	1.0000	347.0	0.73%	363.5	0.76%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.580e-01	1.0000	2825.0	5.97%	2883.2	6.05%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.539e-01	1.0000	4550.0	9.62%	4630.8	9.72%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.516e-01	1.0000	755.0	1.60%	781.3	1.64%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.509e-01	1.0000	1118.0	2.36%	1151.0	2.42%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-2.501e-01	1.0000	12534.0	26.50%	12694.6	26.66%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-2.483e-01	1.0000	5880.0	12.43%	5976.0	12.55%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.383e-01	1.0000	1693.0	3.58%	1737.8	3.65%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-2.249e-01	1.0000	4056.0	8.58%	4135.9	8.69%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.213e-01	1.0000	1404.0	2.97%	1445.2	3.03%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-2.188e-01	1.0000	6064.0	12.82%	6168.7	12.95%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.178e-01	1.0000	2430.0	5.14%	2488.7	5.23%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.166e-01	1.0000	2900.0	6.13%	2965.8	6.23%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.163e-01	1.0000	1055.0	2.23%	1090.1	2.29%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.142e-01	1.0000	5118.0	10.82%	5212.1	10.95%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.041e-01	1.0000	1196.0	2.53%	1235.6	2.59%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.026e-01	1.0000	29.0	0.06%	34.3	0.07%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.007e-01	1.0000	2528.0	5.35%	2590.2	5.44%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.006e-01	1.0000	6237.0	13.19%	6347.1	13.33%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-2.001e-01	1.0000	1835.0	3.88%	1886.4	3.96%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.973e-01	1.0000	2238.0	4.73%	2296.1	4.82%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.954e-01	1.0000	3504.0	7.41%	3581.0	7.52%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.947e-01	1.0000	495.0	1.05%	519.5	1.09%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.923e-01	1.0000	3534.0	7.47%	3613.0	7.59%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.875e-01	1.0000	1516.0	3.21%	1563.3	3.28%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.838e-01	1.0000	251.0	0.53%	268.8	0.56%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.829e-01	1.0000	366.0	0.77%	387.5	0.81%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.787e-01	1.0000	16.0	0.03%	21.0	0.04%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.775e-01	1.0000	325.0	0.69%	345.1	0.72%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.773e-01	1.0000	748.0	1.58%	780.4	1.64%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-1.743e-01	1.0000	5299.0	11.20%	5404.2	11.35%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.699e-01	1.0000	86.0	0.18%	96.3	0.20%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.675e-01	1.0000	1585.0	3.35%	1636.4	3.44%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.641e-01	1.0000	8142.0	17.22%	8283.4	17.39%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.633e-01	1.0000	5322.0	11.25%	5430.5	11.40%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.465e-01	1.0000	7141.0	15.10%	7276.1	15.28%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.430e-01	1.0000	3131.0	6.62%	3213.5	6.75%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.430e-01	1.0000	803.0	1.70%	840.7	1.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.419e-01	1.0000	798.0	1.69%	835.5	1.75%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.298e-01	1.0000	199.0	0.42%	217.5	0.46%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.260e-01	1.0000	282.0	0.60%	304.9	0.64%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.226e-01	1.0000	1816.0	3.84%	1879.1	3.95%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.200e-01	1.0000	3851.0	8.14%	3950.2	8.30%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.199e-01	1.0000	5739.0	12.13%	5865.1	12.32%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.189e-01	1.0000	6874.0	14.53%	7015.7	14.73%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.153e-01	1.0000	524.0	1.11%	557.0	1.17%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.148e-01	1.0000	3757.0	7.94%	3856.7	8.10%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.134e-01	1.0000	3359.0	7.10%	3452.6	7.25%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.130e-01	1.0000	917.0	1.94%	961.8	2.02%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.084e-01	1.0000	445.0	0.94%	475.6	1.00%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.065e-01	1.0000	337.0	0.71%	363.8	0.76%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.035e-01	1.0000	34.0	0.07%	42.0	0.09%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.012e-01	1.0000	13.0	0.03%	18.9	0.04%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-9.965e-02	1.0000	5648.0	11.94%	5780.1	12.14%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-9.849e-02	1.0000	468.0	0.99%	500.3	1.05%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.200e-02	1.0000	1522.0	3.22%	1585.4	3.33%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-9.152e-02	1.0000	1392.0	2.94%	1452.1	3.05%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-8.841e-02	1.0000	4799.0	10.15%	4923.1	10.34%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-8.350e-02	1.0000	2489.0	5.26%	2575.5	5.41%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.332e-02	1.0000	1203.0	2.54%	1260.8	2.65%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-8.070e-02	1.0000	15345.0	32.45%	15596.3	32.75%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-7.597e-02	1.0000	146.0	0.31%	165.0	0.35%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.558e-02	1.0000	59.0	0.12%	71.4	0.15%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.215e-02	1.0000	812.0	1.72%	860.7	1.81%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-6.917e-02	1.0000	31.0	0.07%	40.5	0.09%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-6.641e-02	1.0000	746.0	1.58%	794.0	1.67%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-6.349e-02	1.0000	6147.0	13.00%	6303.9	13.24%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.064e-02	1.0000	168.0	0.36%	190.3	0.40%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-6.022e-02	1.0000	853.0	1.80%	905.5	1.90%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.946e-02	1.0000	4361.0	9.22%	4492.0	9.43%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-5.810e-02	1.0000	298.0	0.63%	328.4	0.69%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-5.475e-02	1.0000	1437.0	3.04%	1508.5	3.17%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.986e-02	1.0000	1341.0	2.84%	1411.5	2.96%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.795e-02	1.0000	1795.0	3.80%	1878.3	3.94%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.313e-02	1.0000	2577.0	5.45%	2681.9	5.63%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-4.307e-02	1.0000	3228.0	6.83%	3346.8	7.03%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.983e-02	1.0000	7105.0	15.02%	7292.6	15.31%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-3.709e-02	1.0000	6870.0	14.53%	7056.6	14.82%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.663e-02	1.0000	673.0	1.42%	725.7	1.52%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-3.623e-02	1.0000	1076.0	2.28%	1143.2	2.40%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-3.360e-02	1.0000	16076.0	33.99%	16377.8	34.39%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.288e-02	1.0000	1436.0	3.04%	1516.3	3.18%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.179e-02	1.0000	3822.0	8.08%	3960.4	8.32%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.131e-02	1.0000	345.0	0.73%	383.6	0.81%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.102e-02	1.0000	927.0	1.96%	991.3	2.08%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.065e-02	1.0000	3436.0	7.27%	3567.5	7.49%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.053e-02	1.0000	2338.0	4.94%	2444.9	5.13%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.044e-02	1.0000	6132.0	12.97%	6313.5	13.26%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.933e-02	1.0000	1189.0	2.51%	1263.8	2.65%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.819e-02	1.0000	457.0	0.97%	502.5	1.06%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.573e-02	1.0000	3149.0	6.66%	3278.0	6.88%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.398e-02	1.0000	790.0	1.67%	852.8	1.79%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.769e-02	1.0000	623.0	1.32%	681.5	1.43%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.761e-02	1.0000	1431.0	3.03%	1521.2	3.19%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.705e-02	1.0000	3968.0	8.39%	4125.1	8.66%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.596e-02	1.0000	862.0	1.82%	932.3	1.96%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.579e-02	1.0000	5146.0	10.88%	5329.6	11.19%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.558e-02	1.0000	24.0	0.05%	36.8	0.08%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.500e-02	1.0000	70.0	0.15%	90.9	0.19%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.447e-02	1.0000	9381.0	19.84%	9637.9	20.24%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.415e-02	1.0000	6329.0	13.38%	6537.6	13.73%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.373e-02	1.0000	224.0	0.47%	260.7	0.55%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.281e-02	1.0000	1086.0	2.30%	1168.9	2.45%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.251e-02	1.0000	4592.0	9.71%	4770.5	10.02%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.086e-02	1.0000	986.0	2.08%	1066.3	2.24%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.061e-02	1.0000	5881.0	12.43%	6089.5	12.79%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-9.545e-03	1.0000	2314.0	4.89%	2442.6	5.13%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-8.043e-03	1.0000	3019.0	6.38%	3170.4	6.66%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.878e-03	1.0000	6781.0	14.34%	7014.2	14.73%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.125e-03	1.0000	5997.0	12.68%	6218.8	13.06%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.564e-03	1.0000	7845.0	16.59%	8102.4	17.01%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-6.557e-03	1.0000	3166.0	6.69%	3325.6	6.98%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.399e-03	1.0000	2892.0	6.11%	3044.8	6.39%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-6.368e-03	1.0000	934.0	1.97%	1018.2	2.14%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.825e-03	1.0000	3611.0	7.64%	3784.5	7.95%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-4.804e-03	1.0000	3421.0	7.23%	3593.6	7.55%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.552e-03	1.0000	296.0	0.63%	345.3	0.73%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.552e-03	1.0000	296.0	0.63%	345.3	0.73%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-4.339e-03	1.0000	438.0	0.93%	498.4	1.05%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.752e-03	1.0000	43.0	0.09%	63.6	0.13%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.700e-03	1.0000	1213.0	2.56%	1316.7	2.77%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.702e-03	1.0000	6553.0	13.86%	6810.6	14.30%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.585e-03	1.0000	136.0	0.29%	172.5	0.36%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.184e-03	1.0000	335.0	0.71%	392.7	0.82%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.956e-03	1.0000	6556.0	13.86%	6822.0	14.33%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.941e-03	1.0000	3272.0	6.92%	3458.0	7.26%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.562e-03	1.0000	431.0	0.91%	498.4	1.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.508e-03	1.0000	1162.0	2.46%	1273.7	2.67%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.299e-03	1.0000	15276.0	32.30%	15690.6	32.95%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.105e-03	1.0000	6213.0	13.14%	6484.5	13.62%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.091e-03	1.0000	11628.0	24.59%	11998.6	25.20%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-7.360e-04	1.0000	14610.0	30.89%	15033.6	31.57%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.700e-04	1.0000	53.0	0.11%	80.3	0.17%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-5.140e-04	1.0000	112.0	0.24%	151.5	0.32%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.000e-04	1.0000	4288.0	9.07%	4531.6	9.52%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.640e-04	1.0000	234.0	0.49%	292.0	0.61%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.950e-04	1.0000	1677.0	3.55%	1831.1	3.85%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.340e-04	1.0000	5005.0	10.58%	5288.6	11.11%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.900e-05	1.0000	10215.0	21.60%	10631.3	22.33%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.500e-05	1.0000	831.0	1.76%	954.4	2.00%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.900e-05	1.0000	2763.0	5.84%	2993.7	6.29%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.800e-05	1.0000	171.0	0.36%	232.1	0.49%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.600e-05	1.0000	3615.0	7.64%	3886.0	8.16%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.000e-06	1.0000	6738.0	14.25%	7127.4	14.97%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	800.0	1.69%	1070.3	2.25%