| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-5 | -1.374e+01 | 0.0005 | 2116.0 | 39.24% | 16188.1 | 36.12% | motif file (matrix) |
svg |
| 2 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.185e+01 | 0.0015 | 520.0 | 9.64% | 3580.1 | 7.99% | motif file (matrix) |
svg |
| 3 |
| HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-4 | -1.058e+01 | 0.0036 | 119.0 | 2.21% | 666.2 | 1.49% | motif file (matrix) |
svg |
| 4 |
| RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer | 1e-4 | -1.010e+01 | 0.0044 | 64.0 | 1.19% | 310.6 | 0.69% | motif file (matrix) |
svg |
| 5 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-4 | -9.622e+00 | 0.0057 | 2715.0 | 50.35% | 21398.5 | 47.74% | motif file (matrix) |
svg |
| 6 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-4 | -9.438e+00 | 0.0057 | 2003.0 | 37.15% | 15543.8 | 34.68% | motif file (matrix) |
svg |
| 7 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-4 | -9.228e+00 | 0.0060 | 1080.0 | 20.03% | 8088.2 | 18.05% | motif file (matrix) |
svg |
| 8 |
| IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer | 1e-3 | -8.942e+00 | 0.0070 | 290.0 | 5.38% | 1938.1 | 4.32% | motif file (matrix) |
svg |
| 9 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.720e+00 | 0.0078 | 386.0 | 7.16% | 2671.6 | 5.96% | motif file (matrix) |
svg |
| 10 |
| THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer | 1e-3 | -8.638e+00 | 0.0078 | 285.0 | 5.29% | 1910.4 | 4.26% | motif file (matrix) |
svg |
| 11 |
| RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer | 1e-3 | -8.412e+00 | 0.0086 | 92.0 | 1.71% | 517.8 | 1.16% | motif file (matrix) |
svg |
| 12 |
| RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-3 | -8.263e+00 | 0.0092 | 484.0 | 8.98% | 3442.5 | 7.68% | motif file (matrix) |
svg |
| 13 |
| ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-3 | -8.200e+00 | 0.0092 | 450.0 | 8.35% | 3182.4 | 7.10% | motif file (matrix) |
svg |
| 14 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-3 | -7.508e+00 | 0.0168 | 269.0 | 4.99% | 1826.8 | 4.08% | motif file (matrix) |
svg |
| 15 |
| Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer | 1e-3 | -7.435e+00 | 0.0168 | 1377.0 | 25.54% | 10594.1 | 23.64% | motif file (matrix) |
svg |
| 16 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.898e+00 | 0.0270 | 266.0 | 4.93% | 1824.2 | 4.07% | motif file (matrix) |
svg |
| 17 |
| PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer | 1e-2 | -6.798e+00 | 0.0281 | 555.0 | 10.29% | 4064.4 | 9.07% | motif file (matrix) |
svg |
| 18 |
| HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-2 | -6.728e+00 | 0.0285 | 158.0 | 2.93% | 1022.8 | 2.28% | motif file (matrix) |
svg |
| 19 |
| CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -6.700e+00 | 0.0285 | 89.0 | 1.65% | 526.1 | 1.17% | motif file (matrix) |
svg |
| 20 |
| Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer | 1e-2 | -6.601e+00 | 0.0291 | 65.0 | 1.21% | 362.4 | 0.81% | motif file (matrix) |
svg |
| 21 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.597e+00 | 0.0291 | 448.0 | 8.31% | 3237.4 | 7.22% | motif file (matrix) |
svg |
| 22 |
| SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-2 | -6.114e+00 | 0.0430 | 131.0 | 2.43% | 840.0 | 1.87% | motif file (matrix) |
svg |
| 23 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -6.047e+00 | 0.0440 | 105.0 | 1.95% | 653.6 | 1.46% | motif file (matrix) |
svg |
| 24 |
| DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer | 1e-2 | -6.020e+00 | 0.0440 | 6.0 | 0.11% | 11.5 | 0.03% | motif file (matrix) |
svg |
| 25 |
| c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.008e+00 | 0.0440 | 168.0 | 3.12% | 1116.2 | 2.49% | motif file (matrix) |
svg |
| 26 |
| EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer | 1e-2 | -5.853e+00 | 0.0472 | 469.0 | 8.70% | 3438.2 | 7.67% | motif file (matrix) |
svg |
| 27 |
| RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-2 | -5.786e+00 | 0.0487 | 700.0 | 12.98% | 5269.9 | 11.76% | motif file (matrix) |
svg |
| 28 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -5.615e+00 | 0.0557 | 356.0 | 6.60% | 2567.6 | 5.73% | motif file (matrix) |
svg |
| 29 |
| CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer | 1e-2 | -5.512e+00 | 0.0596 | 189.0 | 3.51% | 1289.6 | 2.88% | motif file (matrix) |
svg |
| 30 |
| ETS(ETS)/Promoter/Homer | 1e-2 | -5.211e+00 | 0.0778 | 153.0 | 2.84% | 1028.8 | 2.30% | motif file (matrix) |
svg |
| 31 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-2 | -5.165e+00 | 0.0789 | 510.0 | 9.46% | 3799.2 | 8.48% | motif file (matrix) |
svg |
| 32 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -5.147e+00 | 0.0789 | 1907.0 | 35.37% | 15117.4 | 33.73% | motif file (matrix) |
svg |
| 33 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-2 | -4.930e+00 | 0.0937 | 325.0 | 6.03% | 2358.4 | 5.26% | motif file (matrix) |
svg |
| 34 |
| THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer | 1e-2 | -4.868e+00 | 0.0968 | 212.0 | 3.93% | 1487.7 | 3.32% | motif file (matrix) |
svg |
| 35 |
| NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -4.862e+00 | 0.0968 | 34.0 | 0.63% | 179.9 | 0.40% | motif file (matrix) |
svg |
| 36 |
| Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer | 1e-2 | -4.862e+00 | 0.0968 | 1545.0 | 28.65% | 12178.8 | 27.17% | motif file (matrix) |
svg |
| 37 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.857e+00 | 0.0968 | 1267.0 | 23.50% | 9911.4 | 22.11% | motif file (matrix) |
svg |
| 38 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.845e+00 | 0.0968 | 230.0 | 4.27% | 1626.4 | 3.63% | motif file (matrix) |
svg |
| 39 |
| NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer | 1e-2 | -4.842e+00 | 0.0968 | 365.0 | 6.77% | 2675.9 | 5.97% | motif file (matrix) |
svg |
| 40 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -4.784e+00 | 0.0968 | 460.0 | 8.53% | 3426.1 | 7.64% | motif file (matrix) |
svg |
| 41 |
| RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer | 1e-2 | -4.765e+00 | 0.0968 | 82.0 | 1.52% | 516.7 | 1.15% | motif file (matrix) |
svg |
| 42 |
| RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer | 1e-2 | -4.765e+00 | 0.0968 | 82.0 | 1.52% | 516.7 | 1.15% | motif file (matrix) |
svg |
| 43 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-2 | -4.619e+00 | 0.0982 | 2704.0 | 50.15% | 21761.2 | 48.55% | motif file (matrix) |
svg |