LSK_dachsous_RNAseq, danRer11

coldata
##         treatment  group
## mild1        mild mutant
## mild2        mild mutant
## mild3        mild mutant
## severe1    severe mutant
## severe2    severe mutant
## severe3    severe mutant
## wt1            wt     wt
## wt2            wt     wt
## wt3            wt     wt

Alignment quality

heatmap and PCA

Comparisons

Mild vs WT

Severe vs WT

Severe vs Mild

Mutant (Severe and Mild) vs WT

Differentially expressed genes

high in 1st high in 2nd Total
Mild vs WT 1600 886 2486
Severe vs WT 1789 762 2551
Severe vs Mild 123 14 137
Mutant vs WT 1695 781 2476

Volcano plot

padj<0.05, |FC|>2

KEGG and GO (FishEnrichr)

Venn diagram

Highly expressed in 1st

Highly expressed in 2nd