SR002912_HFD_vs_Con_RNAseq, mm10 (trimmed)

name treatment
1058HFD HFD
1063Con Con
1066Con Con
1070HFD HFD
1072Con Con
1077HFD HFD 
coldata
##         treatment
## 1058HFD       HFD
## 1063Con       Con
## 1066Con       Con
## 1070HFD       HFD
## 1072Con       Con
## 1077HFD       HFD

Alignment quality

heatmap and PCA

Comparisons

HFD vs Con

Differentially expressed genes

high in HFD high in Con Total
HFD vs Con 91 13 104

Volcano plot

HFD vs Con, padj<0.05, |FC|>2