HFD_vs_Con: Chond scRNA, mm10 (trimmed)

name treatment
Con156F3 Con
Con158F3 Con
Con160F4 Con
HFD275F3 HFD
HFD73F4 HFD
HFD74F4 HFD 
coldata
##                    treatment
## rna_Con156F3_Chond       Con
## rna_Con158F3_Chond       Con
## rna_Con160F4_Chond       Con
## rna_HFD275F3_Chond       HFD
## rna_HFD73F4_Chond        HFD
## rna_HFD74F4_Chond        HFD

Alignment quality

heatmap and PCA

Comparisons

HFD vs Con

Differentially expressed genes

high in HFD high in Con Total
HFD vs Con 116 223 339

Volcano plot

HFD vs Con, padj<0.05, |FC|>2