Sheep_RNAseq, ARS-UI_Ramb_v3.0

name treatment
CF24B CF
CF26A CF
CF3A CF
CF43B CF
CF6A CF
CF8A CF
CM1A CM
CM24A CM
CM26B CM
CM3B CM
CM44A CM
CM6B CM
TF12A TF
TF13A TF
TF17A TF
TF28B TF
TF34A TF
TF38A TF
TM11A TM
TM13B TM
TM17B TM
TM21A TM
TM38B TM
TM39A TM 
coldata
##       treatment
## CF24B        CF
## CF26A        CF
## CF3A         CF
## CF43B        CF
## CF6A         CF
## CF8A         CF
## CM1A         CM
## CM24A        CM
## CM26B        CM
## CM3B         CM
## CM44A        CM
## CM6B         CM
## TF12A        TF
## TF13A        TF
## TF17A        TF
## TF28B        TF
## TF34A        TF
## TF38A        TF
## TM11A        TM
## TM13B        TM
## TM17B        TM
## TM21A        TM
## TM38B        TM
## TM39A        TM

Alignment quality

heatmap and PCA

Comparisons

TF vs CF

TM vs CM

TF+TM vs CF+CM

CF vs CM

Differentially expressed genes

high in 1st high in 2nd Total
TF vs CF 55 70 125
TM vs CM 44 19 63
TF+TM vs CF+CM 255 166 401
CF vs CM 17 99 116

Volcano plot

Volcano plots padj<0.05, |FC|>2

KEGG and GO (Orthologous Human Genes)

Venn diagram

Highly expressed in 1st

Highly expressed in 2nd