Sheep_RNAseq, ARS-UI_Ramb_v3.0

name treatment
CF27 CF
CF32 CF
CF33 CF
CF34 CF
CF35 CF
CF6 CF
CM15 CM
CM17 CM
CM19 CM
CM36 CM
CM37 CM
CM40 CM
CM4 CM
TF10 TF
TF11 TF
TF24 TF
TF2 TF
TM13 TM
TM16 TM
TM22 TM
TM23 TM
TM28 TM
TM30 TM
TM3 TM 
coldata
##      treatment
## CF27        CF
## CF32        CF
## CF33        CF
## CF34        CF
## CF35        CF
## CF6         CF
## CM15        CM
## CM17        CM
## CM19        CM
## CM36        CM
## CM37        CM
## CM40        CM
## CM4         CM
## TF10        TF
## TF11        TF
## TF24        TF
## TF2         TF
## TM13        TM
## TM16        TM
## TM22        TM
## TM23        TM
## TM28        TM
## TM30        TM
## TM3         TM

Alignment quality

heatmap and PCA

Comparisons

TF vs CF

TM vs CM

TF+TM vs CF+CM

CF vs CM

Differentially expressed genes

high in 1st high in 2nd Total
TF vs CF 47 34 81
TM vs CM 16 36 52
TF+TM vs CF+CM 101 129 230
CF vs CM 28 30 58

Volcano plot

Volcano plots padj<0.05, |FC|>2

KEGG and GO (Orthologous Human Genes)

Venn diagram

Highly expressed in 1st

Highly expressed in 2nd