Information for 20-GAGGTCAAGCCT (Motif 19)

A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
Reverse Opposite:
C G T A C T A G C T A G A G T C A C G T A C G T A C T G C G T A A G T C A G T C C G A T A G T C
p-value:1e-7
log p-value:-1.743e+01
Information Content per bp:1.877
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets116.4 +/- 46.9bp
Average Position of motif in Background90.7 +/- 65.2bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)1.86
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAAGCCT
TRAGGTCA-----
 A C G T A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAAGCCT
AGRGGTCA-----
 A C G T A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GAGGTCAAGCCT
NRBCARRGGTCA-----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GAGGTCAAGCCT
GKBCARAGGTCA-----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
T A C G A C T G A G C T G T A C C G T A T C G A C T G A A C T G C A T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GAGGTCAAGCCT
CAAAGKTCAA----
 A C G T A C G T A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GAGGTCAAGCCT
-AGGTCA-----
 A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGTCAAGCCT
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GAGGTCAAGCCT
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAGCCT
AAGGTCAC----
 A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCAAGCCT
CAAAGGTCAAGGG-
 A C G T A C G T A C T G C G T A A C T G A C T G C G A T A G T C C G T A C G T A C T A G A G T C A G T C A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T