Information for 7-RAGTGTTW (Motif 5)

T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
Reverse Opposite:
C G A T C G T A G T C A A G T C C G T A A G T C C A G T A G T C
p-value:1e-20
log p-value:-4.628e+01
Information Content per bp:1.797
Number of Target Sequences with motif176.0
Percentage of Target Sequences with motif21.08%
Number of Background Sequences with motif4641.7
Percentage of Background Sequences with motif10.12%
Average Position of motif in Targets89.1 +/- 55.8bp
Average Position of motif in Background100.3 +/- 68.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--RAGTGTTW
TTRAGTGSYK
 A C G T A C G T T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGTTW
TTAAGTGCTT
 A C G T A C G T T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:RAGTGTTW
-ATTGTTA
 T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGTTW
TTGAGTGSTT
 A C G T A C G T T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---RAGTGTTW
CTYRAGTGSY-
 A C G T A C G T A C G T T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---RAGTGTTW
NTCAAGTGGN-
 A C G T A C G T A C G T T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGTTW
TTAAGTGGT-
 A C G T A C G T T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---RAGTGTTW
NTCAAGTGG--
 A C G T A C G T A C G T T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RAGTGTTW
AGGTGTGA
 T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:RAGTGTTW
-ATTGTT-
 T C A G G T C A C T A G A C G T A C T G A C G T A C G T C G T A
A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T