Information for 11-CATAAATC (Motif 8)

A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C
Reverse Opposite:
A C T G C G T A A C G T A C G T A C G T C G T A A C G T C T A G
p-value:1e-12
log p-value:-2.930e+01
Information Content per bp:1.906
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif5.27%
Number of Background Sequences with motif639.8
Percentage of Background Sequences with motif1.40%
Average Position of motif in Targets84.3 +/- 54.2bp
Average Position of motif in Background99.8 +/- 64.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CATAAATC-
GCCATAAATCA
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CATAAATC--
GGCCATAAATCAC
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---CATAAATC-
GGCCATAAATCA
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---CATAAATC-
NGYCATAAAWCH
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CATAAATC
GTCATAAAAN
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CATAAATC
GCAATAAAA-
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CATAAATC--
NCYATMAATCAY
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C A C G T A C G T
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----CATAAATC
AAGCCATAAAA-
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CATAAATC
VGCCATAAAA-
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---CATAAATC
KGCCATAAAA-
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A C G A T G T A C
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T