Information for 24-GGTTTATG (Motif 20)

A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G
Reverse Opposite:
A G T C C G T A A C G T C G T A C G T A C G T A G T A C A G T C
p-value:1e-10
log p-value:-2.498e+01
Information Content per bp:1.905
Number of Target Sequences with motif169.0
Percentage of Target Sequences with motif4.61%
Number of Background Sequences with motif1211.5
Percentage of Background Sequences with motif2.66%
Average Position of motif in Targets96.0 +/- 55.6bp
Average Position of motif in Background98.5 +/- 61.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GGTTTATG---
DGWTTTATGRCN
 A C G T A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GGTTTATG--
-TTTTATTGC
 A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GGTTTATG--
NTTTTATGAC
 A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GGTTTATG---
-TTTTATGGCM
 A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T A C G T
A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:GGTTTATG----
-TTTTATGGCTN
 A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GGTTTATG--
NTTTTATDRG
 A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGTTTATG--
TGATTTATGGC
 A C G T A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GGTTTATG---
NTGATTTATGGCC
 A C G T A C G T A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGTTTATG---
TGATTTATGGCC
 A C G T A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGTTTATG--
NTTTTATTGG
 A C T G C A T G A C G T A C G T A C G T C G T A A C G T C T A G A C G T A C G T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G