Information for 6-YTGCCAAGAV (Motif 4)

A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
Reverse Opposite:
A G T C G A C T G A T C A G C T C A G T C T A G T A C G T G A C G C T A T C A G
p-value:1e-49
log p-value:-1.136e+02
Information Content per bp:1.622
Number of Target Sequences with motif870.0
Percentage of Target Sequences with motif23.75%
Number of Background Sequences with motif6599.1
Percentage of Background Sequences with motif14.48%
Average Position of motif in Targets101.2 +/- 54.2bp
Average Position of motif in Background99.4 +/- 64.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-YTGCCAAGAV
NNTGCCAAGNN
 A C G T A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.93
Offset:0
Orientation:forward strand
Alignment:YTGCCAAGAV
TTGCCAAG--
 A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-YTGCCAAGAV
GGTGCCAAGT-
 A C G T A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-YTGCCAAGAV
CGTGCCAAG--
 A C G T A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:forward strand
Alignment:YTGCCAAGAV
ATGCCAACC-
 A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:forward strand
Alignment:YTGCCAAGAV
-TGCCAGCB-
 A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G A C G T

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:YTGCCAAGAV
CTGCCCGCA-
 A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:forward strand
Alignment:YTGCCAAGAV
ATGCCCACC-
 A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-YTGCCAAGAV
RHTGWCAR---
 A C G T A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:YTGCCAAGAV
-TGTCANYT-
 A G T C C G A T A C T G A T G C G A T C G T C A C T G A C T A G C T G A T C A G
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T