Information for 7-CCAGACAGGCTG (Motif 9)

A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G
Reverse Opposite:
T G A C C G T A A T C G G T A C A T G C G C A T A T C G A C G T T A G C C G A T C T A G T A C G
p-value:1e-30
log p-value:-6.936e+01
Information Content per bp:1.697
Number of Target Sequences with motif1651.0
Percentage of Target Sequences with motif58.38%
Number of Background Sequences with motif21921.8
Percentage of Background Sequences with motif47.58%
Average Position of motif in Targets102.2 +/- 54.9bp
Average Position of motif in Background100.9 +/- 65.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGGCTG
CCAGACAG----
 A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGGCTG
CCAGACRSVB--
 A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACAGGCTG
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4/MA1153.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCAGACAGGCTG
TCTAGACA-----
 A C G T A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCAGACAGGCTG
RHHCAGAGAGGB--
 A C G T A C G T A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGGCTG
BCAGACWA----
 A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACAGGCTG
ATGCCAGACN-----
 A C G T A C G T A C G T A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGGCTG---
SCAGYCADGCATGAC
 A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCAGACAGGCTG-
TCCCAGMCRAGCCCC
 A C G T A C G T A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCAGACAGGCTG
---CACAGN---
 A T G C G A T C G C T A A T C G T G C A T A G C C G T A T A C G C A T G T A G C G C A T A C T G
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T