Information for 18-TGGCTGAACAAG (Motif 18)

A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A
p-value:1e-4
log p-value:-1.106e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets9.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGCTGAACAAG-----
NNNNNGAACAATTGANN
 A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGGCTGAACAAG-----
TCACGGAACAATAGGTG
 A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGAACAAG
TWGTCTGV-----
 A C G T A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TGGCTGAACAAG
------AACAAT
 A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

Foxj2/MA0614.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TGGCTGAACAAG
---GTAAACAA-
 A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G
A C G T A C G T A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A A C G T

FOXK1/MA0852.2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGGCTGAACAAG--
AATGTAAACAAGGC
 A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T
C G T A C T G A C A G T T C A G C G A T T G C A T G C A G T C A A G T C G T C A T C G A T A C G T A C G T G A C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TGGCTGAACAAG---
-----GAACAATGGN
 A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TGGCTGAACAAG------
--AATGAACAATGGAATT
 A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGGCTGAACAAG
---GTAAACAAT
 A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G
A C G T A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGGCTGAACAAG
-NGCTN------
 A C G T A C T G A C T G A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T