Information for 1-ATCTTCATGAAT (Motif 2)

C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C T G C G T A A C G T
p-value:1e-4
log p-value:-1.106e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATCTTCATGAAT--
NNTNTCATGAATGT
 C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PH0150.1_Pou4f3/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATCTTCATGAAT----
GACNTCATTAATAANN
 C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATCTTCATGAAT------
-NTTNTATGAATGTGNNC
 C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ATCTTCATGAAT
ATGAATATTCATGAG-
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTCATGAAT
GAATATTCAT----
 A C G T A C G T C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ATCTTCATGAAT---
ACTATGAATGAATGAT
 A C G T C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

HSF2/MA0770.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTCATGAAT
GAANGTTCTAGAA-
 A C G T A C G T C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A A C G T

PH0153.1_Prop1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTCATGAAT---
GNNTNTTAATTAATNCN
 A C G T A C G T C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C T A G G A C T G C A T G C A T G T A C G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A G C T A C G T A G T C A C T G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTCATGAAT
GHATATKCAT----
 A C G T A C G T C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T

HSF1/MA0486.2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTCATGAAT
GAACGTTCTAGAA-
 A C G T A C G T C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T A C T G C G T A C G T A A C G T
C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A A C G T