Information for 9-CGTCCATTGG (Motif 29)

A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A C G T A A C G T A C T G A C T G C G T A A G T C A C T G
p-value:1e-3
log p-value:-8.287e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif16.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets72.0 +/- 0.0bp
Average Position of motif in Background54.7 +/- 106.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CGTCCATTGG--
--CCGATTGGCT
 A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGTCCATTGG--
-NNCCATTGTNN
 A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T
A C G T C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGTCCATTGG---
---CCATTGTTYB
 A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CGTCCATTGG-----
---TGATTGGCTANN
 A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CGTCCATTGG--
---CCATTGTTC
 A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CGTCCATTGG-
---CCWTTGTY
 A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CGTCCATTGG-
---CCTTTGTT
 A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGTCCATTGG--
--NCCATTGTTC
 A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0150.1_Mybl1_2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGTCCATTGG---
CACGGCAGTTGGTNN
 A C G T A C G T A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CGTCCATTGG---
NTGCCCANNGGTNA
 A C G T A G T C A C T G A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C T G A C G T A C G T A C G T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A