Information for 2-TTGAATTCAAAG (Motif 3)

A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A
p-value:1e-4
log p-value:-1.106e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets21.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:TTGAATTCAAAG-
---ACATCAAAGG
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TTGAATTCAAAG
---NATTCAAAT
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TTGAATTCAAAG-
---ACWTCAAAGG
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:TTGAATTCAAAG-
---ASATCAAAGG
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTGAATTCAAAG
NNNTATTGAATTGNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TTGAATTCAAAG---
-AAAGATCAAAGGAA
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T
A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTGAATTCAAAG-
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0171.1_Sox18_2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TTGAATTCAAAG-
GGACTGAATTCATGCC
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTGAATTCAAAG-----
TATAGATCAAAGGAAAA
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTGAATTCAAAG
-CGGTTTCAAA-
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C G T A A C T G
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T