Information for 3-GCAACGTGCTAA (Motif 4)

A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C T G A G T C C G T A A G T C A C T G A C G T A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.106e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GCAACGTGCTAA
--AAGGTGTKAA
 A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCAACGTGCTAA
GGGTACGTGC---
 A C G T A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCAACGTGCTAA
-GTACGTGCCC-
 A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
A C G T T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C A C G T

MAX::MYC/MA0059.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCAACGTGCTAA
ACCACGTGCTC-
 A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
C T G A A G T C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A G C T G A T C A C G T

MYC/MA0147.3/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCAACGTGCTAA
GGCCACGTGCCC-
 A C G T A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
T A C G T A C G T A G C T G A C C T G A A G T C T C A G A G C T A T C G A T G C A G T C A T G C A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCAACGTGCTAA
-RTACGTGC---
 A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GCAACGTGCTAA-
---AGGTGTTAAT
 A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A A C G T
A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCAACGTGCTAA
-GGACGTGC---
 A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCAACGTGCTAA
--DAGGTGTBAA
 A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
A C G T A C G T C T A G C T G A T C A G A T C G A G C T C A T G G A C T A G T C C T G A T G C A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCAACGTGCTAA
TGGCACCATGCCAA
 A C G T A C G T A C T G A G T C C G T A C G T A A G T C A C T G A C G T A C T G A G T C A C G T C G T A C G T A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A