Information for 1-AMCASCAKGKKT (Motif 1)

C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T
Reverse Opposite:
C G T A G T C A G T A C A G T C G T A C A C G T A C T G A T C G A C G T A C T G A C T G A C G T
p-value:1e-7
log p-value:-1.798e+01
Information Content per bp:1.832
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif214.6
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets145.3 +/- 30.3bp
Average Position of motif in Background106.4 +/- 73.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AMCASCAKGKKT
DCTCAGCAGG---
 A C G T C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AMCASCAKGKKT
CACAGCAGGGGG
 C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AMCASCAKGKKT
CCACACAGCAGGAGA
 A C G T A C G T A C G T C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AMCASCAKGKKT
CCACACAGCAGGAGA
 A C G T A C G T A C G T C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AMCASCAKGKKT--
DCHCAGCAGGRGGCC
 A C G T C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AMCASCAKGKKT
GAGCACAGCAGGACA
 A C G T A C G T A C G T C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

SCRT1/MA0743.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AMCASCAKGKKT--
GAGCAACAGGTGGTT
 A C G T C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T A C G T A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AMCASCAKGKKT
CATAAGACCACCATTAC-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AMCASCAKGKKT
GTACCCGCATN---
 A C G T A C G T C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AMCASCAKGKKT
ATGCAACAGGTGG
 A C G T C G T A G T A C A G T C G T C A A T G C A G T C C G T A A C T G A C T G C A G T A C G T A C G T
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G