Information for 18-CTGACCTGGATA (Motif 19)

A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A G T C A G T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.026e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets111.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGGATA
-TGACCTTGAT-
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCTGGATA
NNHYTGACCTAGWTT
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORC/MA1151.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGGATA-
-TGACCTANTTAN
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGGATA
-TGACCTARTT-
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGGATA
-TGACCTARTT-
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTGACCTGGATA--
TTGACCTANTTATN
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTGACCTGGATA
NTGACCTTGA--
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTGACCTGGATA
BTGACCTAVTTW
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

ESRRB/MA0141.3/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTGACCTGGATA
NATGACCTTGA--
 A C G T A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTGACCTGGATA
NTGACCTAATT-
 A G T C A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C T G C G T A A C G T C G T A
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T A C G T