Information for 2-GCCCTTATAC (Motif 3)

A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C G T C G T A C G T A A C T G A C T G A C T G A G T C
p-value:1e-4
log p-value:-1.026e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets132.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCCCTTATAC----
GAGCCCTTGTCCCTAA
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

PB0128.1_Gcm1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCCCTTATAC---
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C A C G T A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCCTTATAC
CTGCCCGCA---
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCCTTATAC
AACCTTATAT
 A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

SRF/MA0083.3/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTATAC-----
TGNCCATATATGGTCA
 A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCCCTTATAC
BCMATTAG--
 A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCCTTATAC----
--CCTTTTATAGNC
 A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCCCTTATAC
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GCCCTTATAC
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCCTTATAC
ACCACTTAA--
 A C G T A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C G T C G T A A G T C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T