Information for 12-CAGGCAGGGCTA (Motif 15)

A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A
Reverse Opposite:
C G A T C G T A A C T G A G T C A G T C G T A C C G A T A C T G A G T C G T A C C G A T A T C G
p-value:1e-8
log p-value:-1.992e+01
Information Content per bp:1.783
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif31.58%
Number of Background Sequences with motif318.5
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets60.2 +/- 44.6bp
Average Position of motif in Background99.7 +/- 63.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:CAGGCAGGGCTA
-------NGCTN
 A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAGGCAGGGCTA
-WDNCTGGGCA-
 A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAGGCAGGGCTA-
-----AGGCCTNG
 A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAGGCAGGGCTA--
------NGGATTAN
 A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CAGGCAGGGCTA-
-----AGGCCTAG
 A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAGGCAGGGCTA-
GTCATGCHTGRCTGS
 A C G T A C G T A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

SP4/MA0685.1/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CAGGCAGGGCTA-
NAAGGGGGCGTGGCTTN
 A C G T A C G T A C G T A C G T A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A A C G T
C T G A C T G A C G T A C T A G C A T G T C A G A C T G A T C G T G A C A C T G A C G T T C A G C A T G G A T C G A C T C G A T T C G A

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCAGGGCTA-
NMMNBAAAGGGTTAA
 A C G T A C G T A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A A C G T
T A C G T G C A G T C A G C A T A C T G T G C A T C G A C T G A C A T G C T A G A C T G C A G T G A C T C G T A G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CAGGCAGGGCTA-
-----TWGTCTGV
 A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CAGGCAGGGCTA--
--TGATTGGCTANN
 A T G C C G T A A C T G C T A G G T A C C G T A A C T G A C T G A C T G A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T