Information for 17-AGGGCTTTCTCC (Motif 19)

C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C G T
p-value:1e-7
log p-value:-1.640e+01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif10.53%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets191.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGGGCTTTCTCC-
-GGGGATTCCCCC
 C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T
A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB1/MA0105.4/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGGCTTTCTCC-
AGGGGAATCCCCT
 C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGGCTTTCTCC-
AGGGGATTCCCCT
 C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGGCTTTCTCC
NGGGGATTTCCC-
 A C G T C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGGGCTTTCTCC---
---ACTTTCACTTTC
 C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGGCTTTCTCC
GGGGATTTCC--
 C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGGGCTTTCTCC-
---YCTTTGTTCC
 C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCTTTCTCC
NNGCACCTTTCTCC
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

PRDM1/MA0508.2/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGGGCTTTCTCC
-TCACTTTCAC-
 C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C
A C G T G C A T G A T C T C G A G A T C C A G T C G A T G C A T T G A C G C T A G A T C A C G T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGGCTTTCTCC
GGGAATTTCC--
 C G T A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A G T C A C G T A G T C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T