Information for 24-AGTAAATC (Motif 18)

C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C
Reverse Opposite:
A C T G C G T A A G C T A C G T A C G T C G T A G T A C A C G T
p-value:1e-11
log p-value:-2.673e+01
Information Content per bp:1.940
Number of Target Sequences with motif164.0
Percentage of Target Sequences with motif2.94%
Number of Background Sequences with motif710.7
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets105.9 +/- 53.2bp
Average Position of motif in Background101.4 +/- 67.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AGTAAATC--
GGCCATAAATCAC
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer

Match Rank:2
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----AGTAAATC---
NTTGATTGAATCWGV
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C A C G T A C G T A C G T
A C G T C G A T C G A T T C A G C G T A A C G T A C G T T C A G C T G A C G T A A C G T A G T C G C T A T A C G T C A G

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:forward strand
Alignment:AGTAAATC----
--CAAATCACTG
 C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGTAAATC--
NCYATMAATCAY
 A C G T A C G T C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C A C G T A C G T
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AGTAAATC-
GGCCATAAATCA
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGTAAATC
ATTAAA--
 C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AGTAAATC-
NGYCATAAAWCH
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AGTAAATC
NACAGGAAAT-
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGTAAATC-
GCCATAAATCA
 A C G T A C G T C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PH0124.1_Obox5_1/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGTAAATC------
NANANTTAATCCCNNNN
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A