Information for 4-YTGGCAGG (Motif 3)

A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G
Reverse Opposite:
A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A
p-value:1e-90
log p-value:-2.083e+02
Information Content per bp:1.812
Number of Target Sequences with motif2163.0
Percentage of Target Sequences with motif38.76%
Number of Background Sequences with motif11536.4
Percentage of Background Sequences with motif26.34%
Average Position of motif in Targets266.4 +/- 190.2bp
Average Position of motif in Background231.4 +/- 152.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:YTGGCAGG
TTGCCAAG
 A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:2
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--YTGGCAGG
VGCTGGCA--
 A C G T A C G T A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-YTGGCAGG
NTTGGCANN
 A C G T A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--YTGGCAGG
NNTTGGCANN
 A C G T A C G T A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.78
Offset:0
Orientation:forward strand
Alignment:YTGGCAGG
TTGACAGC
 A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

NFIC/MA0161.2/Jaspar

Match Rank:6
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-YTGGCAGG--
NNTGCCAAGNN
 A C G T A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-YTGGCAGG-
VBTGWCAGCB
 A C G T A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G A C G T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--YTGGCAGG
ARNTGACA--
 A C G T A C G T A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-YTGGCAGG
RHTGWCAR-
 A C G T A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.75
Offset:0
Orientation:forward strand
Alignment:YTGGCAGG
TTGACAGG
 A G C T A C G T A C T G A T C G A G T C C G T A C T A G T A C G
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G