Information for 7-CYATTCAT (Motif 6)

A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T
Reverse Opposite:
T C G A A C G T C T A G C G T A G T C A C G A T T C A G A T C G
p-value:1e-67
log p-value:-1.543e+02
Information Content per bp:1.762
Number of Target Sequences with motif1968.0
Percentage of Target Sequences with motif35.27%
Number of Background Sequences with motif10873.4
Percentage of Background Sequences with motif24.83%
Average Position of motif in Targets261.3 +/- 187.0bp
Average Position of motif in Background232.1 +/- 146.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CYATTCAT------
ACATTCATGACACG
 A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----CYATTCAT-----
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

NFYA/MA0060.3/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CYATTCAT-
AACCAATCAGA
 A C G T A C G T A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T A C G T
T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CYATTCAT---
NNCATTCATTCATNNN
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CYATTCAT----
--TTTCATKGCC
 A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A C G T C G A T A G T C G T C A A G C T C A G T C T A G A T G C G A T C

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CYATTCAT-----
AATCAATTCAATAATT
 A C G T A C G T A C G T A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CYATTCAT
ACTAGCCAATCA-
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CYATTCAT
CCAATCAA
 A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CYATTCAT----
--TTTCATTRCC
 A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CYATTCAT
GAATATTCAT
 A C G T A C G T A T G C A G T C C G T A C A G T A C G T A G T C C G T A A G C T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T