Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5580)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43800)	% of Background Sequences with Motif
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-314	-7.236e+02	0.0000	1761.0	31.56%	5356.8	12.23%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-210	-4.854e+02	0.0000	1411.0	25.29%	4629.0	10.57%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-204	-4.720e+02	0.0000	1398.0	25.05%	4627.5	10.57%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-204	-4.718e+02	0.0000	1280.0	22.94%	4011.7	9.16%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-201	-4.643e+02	0.0000	1586.0	28.42%	5699.0	13.01%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-196	-4.531e+02	0.0000	2209.0	39.59%	9539.1	21.78%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-194	-4.471e+02	0.0000	1011.0	18.12%	2794.2	6.38%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-192	-4.422e+02	0.0000	1589.0	28.48%	5846.6	13.35%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-182	-4.193e+02	0.0000	1688.0	30.25%	6564.2	14.99%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-153	-3.538e+02	0.0000	2541.0	45.54%	12614.0	28.80%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-150	-3.475e+02	0.0000	761.0	13.64%	2029.9	4.63%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-144	-3.326e+02	0.0000	2090.0	37.46%	9748.0	22.26%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-122	-2.830e+02	0.0000	2650.0	47.49%	14122.6	32.24%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-101	-2.348e+02	0.0000	3456.0	61.94%	20847.0	47.60%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-99	-2.290e+02	0.0000	994.0	17.81%	3843.3	8.77%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-93	-2.161e+02	0.0000	624.0	11.18%	1951.2	4.46%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-93	-2.151e+02	0.0000	527.0	9.44%	1491.3	3.40%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-85	-1.970e+02	0.0000	2926.0	52.44%	17258.0	39.40%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-78	-1.816e+02	0.0000	555.0	9.95%	1784.8	4.07%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-61	-1.421e+02	0.0000	2812.0	50.39%	17246.7	39.38%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-50	-1.163e+02	0.0000	1265.0	22.67%	6589.2	15.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-49	-1.137e+02	0.0000	1181.0	21.16%	6069.0	13.86%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-44	-1.027e+02	0.0000	717.0	12.85%	3255.3	7.43%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-42	-9.826e+01	0.0000	321.0	5.75%	1061.6	2.42%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-42	-9.810e+01	0.0000	365.0	6.54%	1287.1	2.94%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-42	-9.678e+01	0.0000	992.0	17.78%	5051.5	11.53%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-41	-9.529e+01	0.0000	188.0	3.37%	457.1	1.04%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-38	-8.827e+01	0.0000	532.0	9.53%	2289.0	5.23%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-34	-7.850e+01	0.0000	1486.0	26.63%	8686.7	19.83%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-33	-7.722e+01	0.0000	662.0	11.86%	3188.9	7.28%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-33	-7.637e+01	0.0000	747.0	13.39%	3734.6	8.53%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-30	-6.908e+01	0.0000	180.0	3.23%	526.0	1.20%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-29	-6.696e+01	0.0000	191.0	3.42%	588.6	1.34%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-28	-6.546e+01	0.0000	1679.0	30.09%	10322.0	23.57%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-26	-5.998e+01	0.0000	2117.0	37.94%	13670.2	31.21%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-25	-5.895e+01	0.0000	562.0	10.07%	2780.0	6.35%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-24	-5.636e+01	0.0000	162.0	2.90%	502.2	1.15%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-23	-5.394e+01	0.0000	806.0	14.44%	4441.2	10.14%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-23	-5.378e+01	0.0000	1494.0	26.77%	9246.6	21.11%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-22	-5.279e+01	0.0000	750.0	13.44%	4086.6	9.33%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-22	-5.151e+01	0.0000	1078.0	19.32%	6345.5	14.49%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-22	-5.113e+01	0.0000	1203.0	21.56%	7229.9	16.51%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-21	-4.956e+01	0.0000	787.0	14.10%	4387.5	10.02%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-21	-4.909e+01	0.0000	1078.0	19.32%	6394.8	14.60%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-20	-4.664e+01	0.0000	925.0	16.58%	5382.0	12.29%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-19	-4.546e+01	0.0000	970.0	17.38%	5716.9	13.05%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-19	-4.449e+01	0.0000	947.0	16.97%	5576.4	12.73%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-18	-4.370e+01	0.0000	1218.0	21.83%	7501.8	17.13%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-18	-4.336e+01	0.0000	515.0	9.23%	2690.0	6.14%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-18	-4.233e+01	0.0000	453.0	8.12%	2306.4	5.27%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-17	-4.118e+01	0.0000	2910.0	52.15%	20281.8	46.31%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-16	-3.902e+01	0.0000	669.0	11.99%	3778.2	8.63%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-16	-3.832e+01	0.0000	1228.0	22.01%	7704.5	17.59%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-16	-3.775e+01	0.0000	487.0	8.73%	2592.0	5.92%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-16	-3.706e+01	0.0000	1361.0	24.39%	8699.5	19.86%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-15	-3.668e+01	0.0000	1663.0	29.80%	10927.1	24.95%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-15	-3.624e+01	0.0000	717.0	12.85%	4157.9	9.49%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-15	-3.548e+01	0.0000	1946.0	34.87%	13077.5	29.86%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-15	-3.539e+01	0.0000	2800.0	50.18%	19621.7	44.80%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-14	-3.414e+01	0.0000	2830.0	50.72%	19900.4	45.44%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-14	-3.336e+01	0.0000	658.0	11.79%	3811.3	8.70%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-14	-3.261e+01	0.0000	811.0	14.53%	4884.9	11.15%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-13	-3.211e+01	0.0000	1755.0	31.45%	11755.5	26.84%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-13	-3.103e+01	0.0000	1380.0	24.73%	9011.6	20.57%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-13	-3.009e+01	0.0000	1669.0	29.91%	11181.0	25.53%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-13	-3.007e+01	0.0000	1352.0	24.23%	8835.9	20.17%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-12	-2.858e+01	0.0000	1181.0	21.16%	7631.6	17.42%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-12	-2.828e+01	0.0000	161.0	2.89%	683.6	1.56%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-12	-2.776e+01	0.0000	1405.0	25.18%	9298.2	21.23%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-11	-2.538e+01	0.0000	1082.0	19.39%	7008.6	16.00%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-10	-2.508e+01	0.0000	738.0	13.23%	4552.3	10.39%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-10	-2.506e+01	0.0000	1388.0	24.87%	9263.8	21.15%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-10	-2.505e+01	0.0000	1650.0	29.57%	11215.3	25.61%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-10	-2.489e+01	0.0000	394.0	7.06%	2191.6	5.00%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-10	-2.480e+01	0.0000	1072.0	19.21%	6953.1	15.88%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-10	-2.408e+01	0.0000	894.0	16.02%	5689.9	12.99%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-10	-2.353e+01	0.0000	1377.0	24.68%	9235.1	21.09%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-10	-2.316e+01	0.0000	1479.0	26.51%	10007.2	22.85%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-9	-2.284e+01	0.0000	4300.0	77.06%	32131.1	73.36%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-9	-2.248e+01	0.0000	1149.0	20.59%	7590.5	17.33%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-9	-2.233e+01	0.0000	2460.0	44.09%	17500.3	39.96%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-9	-2.207e+01	0.0000	1832.0	32.83%	12703.3	29.00%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.168e+01	0.0000	131.0	2.35%	571.6	1.30%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-9	-2.156e+01	0.0000	2837.0	50.84%	20468.5	46.73%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-8	-2.066e+01	0.0000	1206.0	21.61%	8073.3	18.43%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-8	-2.014e+01	0.0000	303.0	5.43%	1672.8	3.82%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-8	-2.003e+01	0.0000	1457.0	26.11%	9963.6	22.75%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-8	-1.956e+01	0.0000	1234.0	22.11%	8321.3	19.00%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-8	-1.950e+01	0.0000	301.0	5.39%	1670.4	3.81%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-8	-1.871e+01	0.0000	341.0	6.11%	1952.1	4.46%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-8	-1.867e+01	0.0000	1310.0	23.48%	8920.5	20.37%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-7	-1.836e+01	0.0000	238.0	4.27%	1276.6	2.91%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-7	-1.781e+01	0.0000	337.0	6.04%	1943.9	4.44%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-7	-1.773e+01	0.0000	170.0	3.05%	851.7	1.94%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-7	-1.737e+01	0.0000	2288.0	41.00%	16406.2	37.46%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-7	-1.718e+01	0.0000	151.0	2.71%	740.0	1.69%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-7	-1.685e+01	0.0000	240.0	4.30%	1314.3	3.00%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-7	-1.661e+01	0.0000	1086.0	19.46%	7339.1	16.76%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-6	-1.585e+01	0.0000	523.0	9.37%	3279.2	7.49%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-6	-1.550e+01	0.0000	304.0	5.45%	1767.3	4.04%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-6	-1.506e+01	0.0000	433.0	7.76%	2667.5	6.09%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-6	-1.506e+01	0.0000	1268.0	22.72%	8758.9	20.00%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-6	-1.482e+01	0.0000	727.0	13.03%	4774.7	10.90%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-6	-1.475e+01	0.0000	1428.0	25.59%	9974.0	22.77%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-6	-1.457e+01	0.0000	101.0	1.81%	466.9	1.07%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-6	-1.451e+01	0.0000	1800.0	32.26%	12808.7	29.24%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-6	-1.443e+01	0.0000	725.0	12.99%	4773.8	10.90%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-6	-1.439e+01	0.0000	2015.0	36.11%	14460.6	33.02%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-6	-1.403e+01	0.0000	463.0	8.30%	2906.6	6.64%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-6	-1.391e+01	0.0000	186.0	3.33%	1010.9	2.31%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-5	-1.379e+01	0.0000	262.0	4.70%	1519.0	3.47%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-5	-1.349e+01	0.0000	1207.0	21.63%	8373.9	19.12%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-5	-1.286e+01	0.0000	363.0	6.51%	2235.1	5.10%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-5	-1.246e+01	0.0000	3090.0	55.38%	22942.7	52.38%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-5	-1.242e+01	0.0000	1951.0	34.96%	14079.1	32.14%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-5	-1.205e+01	0.0000	94.0	1.68%	452.1	1.03%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-5	-1.170e+01	0.0000	581.0	10.41%	3825.4	8.73%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-5	-1.169e+01	0.0000	1170.0	20.97%	8182.0	18.68%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-5	-1.167e+01	0.0000	787.0	14.10%	5332.0	12.17%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-5	-1.157e+01	0.0000	343.0	6.15%	2129.1	4.86%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-4	-1.127e+01	0.0000	359.0	6.43%	2250.1	5.14%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-4	-1.079e+01	0.0001	199.0	3.57%	1154.5	2.64%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-4	-1.079e+01	0.0001	199.0	3.57%	1154.5	2.64%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-4	-1.008e+01	0.0001	216.0	3.87%	1286.0	2.94%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-9.893e+00	0.0002	558.0	10.00%	3725.2	8.51%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-4	-9.779e+00	0.0002	560.0	10.04%	3744.6	8.55%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-4	-9.764e+00	0.0002	1885.0	33.78%	13736.4	31.36%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-4	-9.747e+00	0.0002	1298.0	23.26%	9252.4	21.12%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-4	-9.469e+00	0.0003	2022.0	36.24%	14812.4	33.82%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-4	-9.247e+00	0.0003	891.0	15.97%	6215.2	14.19%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-3	-9.014e+00	0.0004	137.0	2.46%	773.7	1.77%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-8.968e+00	0.0004	813.0	14.57%	5647.1	12.89%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-8.932e+00	0.0004	2087.0	37.40%	15352.6	35.05%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-3	-8.928e+00	0.0004	547.0	9.80%	3683.2	8.41%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-3	-8.908e+00	0.0004	374.0	6.70%	2429.0	5.55%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-3	-8.815e+00	0.0005	1690.0	30.29%	12301.9	28.09%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-8.794e+00	0.0005	1410.0	25.27%	10161.3	23.20%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-8.376e+00	0.0007	984.0	17.63%	6959.5	15.89%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-8.163e+00	0.0009	2156.0	38.64%	15943.0	36.40%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-8.042e+00	0.0010	396.0	7.10%	2618.9	5.98%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-7.855e+00	0.0012	672.0	12.04%	4653.2	10.62%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-3	-7.846e+00	0.0012	801.0	14.35%	5615.6	12.82%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-7.828e+00	0.0012	699.0	12.53%	4855.8	11.09%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-3	-7.745e+00	0.0013	24.0	0.43%	86.4	0.20%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-3	-7.592e+00	0.0015	220.0	3.94%	1376.0	3.14%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-3	-7.451e+00	0.0017	986.0	17.67%	7028.5	16.05%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-3	-7.280e+00	0.0020	571.0	10.23%	3932.1	8.98%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-7.267e+00	0.0020	469.0	8.41%	3181.4	7.26%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-3	-7.099e+00	0.0024	107.0	1.92%	609.3	1.39%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-3	-6.962e+00	0.0027	1269.0	22.74%	9208.0	21.02%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-3	-6.913e+00	0.0028	479.0	8.58%	3270.4	7.47%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-6.592e+00	0.0039	464.0	8.32%	3174.8	7.25%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-2	-6.478e+00	0.0043	549.0	9.84%	3808.1	8.69%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-2	-6.267e+00	0.0053	127.0	2.28%	763.0	1.74%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-6.042e+00	0.0066	700.0	12.54%	4959.2	11.32%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-2	-5.969e+00	0.0070	208.0	3.73%	1338.3	3.06%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-5.962e+00	0.0070	845.0	15.14%	6056.7	13.83%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-5.756e+00	0.0086	1074.0	19.25%	7808.8	17.83%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-2	-5.661e+00	0.0094	1141.0	20.45%	8326.7	19.01%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-2	-5.646e+00	0.0094	32.0	0.57%	148.4	0.34%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-5.595e+00	0.0099	87.0	1.56%	504.7	1.15%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-2	-5.574e+00	0.0100	121.0	2.17%	737.3	1.68%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-5.432e+00	0.0115	144.0	2.58%	901.7	2.06%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-5.376e+00	0.0120	155.0	2.78%	980.0	2.24%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-5.376e+00	0.0120	155.0	2.78%	980.0	2.24%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-2	-5.353e+00	0.0122	1384.0	24.80%	10212.1	23.32%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-5.203e+00	0.0141	372.0	6.67%	2560.5	5.85%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-2	-4.754e+00	0.0220	150.0	2.69%	963.9	2.20%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-4.669e+00	0.0238	276.0	4.95%	1878.2	4.29%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-4.646e+00	0.0242	699.0	12.53%	5040.2	11.51%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-4.518e+00	0.0273	1355.0	24.28%	10063.1	22.98%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-4.480e+00	0.0282	848.0	15.20%	6183.7	14.12%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-4.296e+00	0.0337	341.0	6.11%	2375.4	5.42%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-4.137e+00	0.0393	1312.0	23.51%	9768.0	22.30%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-4.103e+00	0.0404	1153.0	20.66%	8548.4	19.52%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-4.093e+00	0.0406	209.0	3.75%	1412.1	3.22%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-4.060e+00	0.0417	130.0	2.33%	842.0	1.92%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.963e+00	0.0457	102.0	1.83%	646.7	1.48%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.899e+00	0.0484	278.0	4.98%	1929.0	4.40%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.859e+00	0.0501	239.0	4.28%	1642.5	3.75%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.712e+00	0.0578	555.0	9.95%	4016.6	9.17%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.354e+00	0.0822	15.0	0.27%	69.1	0.16%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.207e+00	0.0946	1335.0	23.92%	10043.9	22.93%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.089e+00	0.1060	1161.0	20.81%	8712.4	19.89%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-1	-3.087e+00	0.1060	1144.0	20.50%	8581.6	19.59%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-3.058e+00	0.1081	663.0	11.88%	4889.4	11.16%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.041e+00	0.1094	204.0	3.66%	1422.1	3.25%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-3.036e+00	0.1094	587.0	10.52%	4312.0	9.85%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.953e+00	0.1181	633.0	11.34%	4669.3	10.66%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-1	-2.917e+00	0.1219	1320.0	23.66%	9961.5	22.74%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.909e+00	0.1222	111.0	1.99%	744.7	1.70%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.892e+00	0.1236	1853.0	33.21%	14103.1	32.20%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-1	-2.878e+00	0.1248	60.0	1.08%	379.0	0.87%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-2.868e+00	0.1254	1176.0	21.08%	8854.0	20.22%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.842e+00	0.1280	2911.0	52.17%	22385.4	51.11%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.733e+00	0.1420	128.0	2.29%	875.7	2.00%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.714e+00	0.1440	411.0	7.37%	2998.9	6.85%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-2.661e+00	0.1510	950.0	17.03%	7132.2	16.28%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.568e+00	0.1649	289.0	5.18%	2085.9	4.76%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-1	-2.560e+00	0.1654	299.0	5.36%	2161.9	4.94%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.537e+00	0.1684	857.0	15.36%	6430.0	14.68%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.400e+00	0.1922	374.0	6.70%	2741.5	6.26%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.387e+00	0.1937	379.0	6.79%	2780.3	6.35%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.386e+00	0.1937	75.0	1.34%	501.9	1.15%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.382e+00	0.1937	66.0	1.18%	436.2	1.00%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.377e+00	0.1937	921.0	16.51%	6941.6	15.85%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-2.311e+00	0.2050	1360.0	24.37%	10350.5	23.63%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.310e+00	0.2050	568.0	10.18%	4231.8	9.66%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-2.203e+00	0.2262	2035.0	36.47%	15625.9	35.68%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-2.171e+00	0.2325	1182.0	21.18%	8988.2	20.52%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.136e+00	0.2395	122.0	2.19%	857.8	1.96%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.126e+00	0.2410	218.0	3.91%	1578.3	3.60%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.099e+00	0.2464	381.0	6.83%	2819.6	6.44%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.977e+00	0.2768	199.0	3.57%	1444.3	3.30%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.961e+00	0.2800	59.0	1.06%	399.2	0.91%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.949e+00	0.2823	373.0	6.68%	2771.1	6.33%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.949e+00	0.2823	42.0	0.75%	276.8	0.63%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.945e+00	0.2823	418.0	7.49%	3116.1	7.11%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.887e+00	0.2961	702.0	12.58%	5309.7	12.12%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.853e+00	0.3049	68.0	1.22%	469.9	1.07%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.849e+00	0.3049	10.0	0.18%	54.1	0.12%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.797e+00	0.3196	448.0	8.03%	3361.1	7.67%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.780e+00	0.3238	700.0	12.54%	5307.9	12.12%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.777e+00	0.3238	6.0	0.11%	29.8	0.07%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.758e+00	0.3279	1922.0	34.44%	14820.4	33.84%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.741e+00	0.3321	681.0	12.20%	5165.4	11.79%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.705e+00	0.3427	21.0	0.38%	132.5	0.30%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.704e+00	0.3427	988.0	17.71%	7550.8	17.24%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.632e+00	0.3656	568.0	10.18%	4305.5	9.83%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.512e+00	0.4104	289.0	5.18%	2167.1	4.95%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.504e+00	0.4117	797.0	14.28%	6097.8	13.92%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.427e+00	0.4428	296.0	5.30%	2229.9	5.09%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.393e+00	0.4561	346.0	6.20%	2618.6	5.98%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.382e+00	0.4594	574.0	10.29%	4384.3	10.01%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.381e+00	0.4594	137.0	2.46%	1013.5	2.31%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.367e+00	0.4621	11.0	0.20%	68.2	0.16%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.292e+00	0.4959	1566.0	28.06%	12131.0	27.70%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.282e+00	0.4991	143.0	2.56%	1066.3	2.43%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.268e+00	0.5037	143.0	2.56%	1067.1	2.44%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.251e+00	0.5104	1723.0	30.88%	13368.2	30.52%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.180e+00	0.5456	221.0	3.96%	1675.8	3.83%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.172e+00	0.5481	296.0	5.30%	2256.9	5.15%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.161e+00	0.5515	548.0	9.82%	4214.9	9.62%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.142e+00	0.5597	173.0	3.10%	1308.6	2.99%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.106e+00	0.5781	495.0	8.87%	3810.5	8.70%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.091e+00	0.5841	2775.0	49.73%	21653.7	49.44%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.066e+00	0.5966	2380.0	42.65%	18561.7	42.38%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.031e+00	0.6157	125.0	2.24%	947.8	2.16%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-9.775e-01	0.6468	257.0	4.61%	1976.5	4.51%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.704e-01	0.6487	157.0	2.81%	1200.1	2.74%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.698e-01	0.6487	141.0	2.53%	1076.6	2.46%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-9.577e-01	0.6518	205.0	3.67%	1574.8	3.60%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.508e-01	0.6537	144.0	2.58%	1101.7	2.52%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.361e-01	0.6608	13.0	0.23%	92.7	0.21%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.318e-01	0.6611	18.0	0.32%	130.3	0.30%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-9.308e-01	0.6611	730.0	13.08%	5674.0	12.95%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-9.251e-01	0.6611	77.0	1.38%	584.2	1.33%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.175e-01	0.6628	79.0	1.42%	600.4	1.37%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.050e-01	0.6685	901.0	16.15%	7017.3	16.02%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-9.046e-01	0.6685	2674.0	47.92%	20914.2	47.75%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.528e-01	0.6989	554.0	9.93%	4313.1	9.85%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-8.137e-01	0.7241	818.0	14.66%	6388.4	14.59%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.504e-01	0.7684	964.0	17.28%	7548.6	17.23%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.002e-01	0.8049	33.0	0.59%	256.2	0.58%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-6.947e-01	0.8063	1281.0	22.96%	10051.1	22.95%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.894e-01	0.8075	10.0	0.18%	76.5	0.17%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.581e-01	0.8301	271.0	4.86%	2130.1	4.86%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.295e-01	0.8510	554.0	9.93%	4360.2	9.96%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.239e-01	0.8526	946.0	16.95%	7442.2	16.99%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-6.120e-01	0.8596	331.0	5.93%	2610.2	5.96%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.096e-01	0.8596	107.0	1.92%	846.3	1.93%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.064e-01	0.8596	245.0	4.39%	1934.3	4.42%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.996e-01	0.8607	246.0	4.41%	1943.7	4.44%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.399e-01	0.9104	334.0	5.99%	2648.2	6.05%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.612e-01	0.9814	3469.0	62.17%	27319.5	62.38%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.304e-01	1.0000	668.0	11.97%	5314.0	12.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.258e-01	1.0000	125.0	2.24%	1013.5	2.31%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-4.167e-01	1.0000	309.0	5.54%	2478.4	5.66%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.099e-01	1.0000	11.0	0.20%	95.3	0.22%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.901e-01	1.0000	25.0	0.45%	212.3	0.48%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-3.745e-01	1.0000	24.0	0.43%	205.6	0.47%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-3.703e-01	1.0000	650.0	11.65%	5193.4	11.86%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-3.647e-01	1.0000	64.0	1.15%	532.1	1.21%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-3.466e-01	1.0000	214.0	3.84%	1739.2	3.97%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.992e-01	1.0000	659.0	11.81%	5293.7	12.09%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.681e-01	1.0000	1653.0	29.62%	13165.9	30.06%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.568e-01	1.0000	637.0	11.42%	5138.7	11.73%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.323e-01	1.0000	2166.0	38.82%	17231.1	39.34%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.198e-01	1.0000	529.0	9.48%	4297.9	9.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.133e-01	1.0000	254.0	4.55%	2099.2	4.79%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.070e-01	1.0000	3512.0	62.94%	27814.0	63.50%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.936e-01	1.0000	260.0	4.66%	2155.1	4.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.920e-01	1.0000	641.0	11.49%	5205.9	11.89%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.868e-01	1.0000	25.0	0.45%	234.0	0.53%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.777e-01	1.0000	44.0	0.79%	396.1	0.90%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.768e-01	1.0000	108.0	1.94%	928.0	2.12%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.730e-01	1.0000	524.0	9.39%	4283.6	9.78%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.653e-01	1.0000	141.0	2.53%	1201.0	2.74%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.530e-01	1.0000	1535.0	27.51%	12327.9	28.15%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.498e-01	1.0000	855.0	15.32%	6939.0	15.84%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.459e-01	1.0000	37.0	0.66%	343.7	0.78%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.372e-01	1.0000	1077.0	19.30%	8715.1	19.90%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.265e-01	1.0000	2824.0	50.61%	22508.7	51.39%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.217e-01	1.0000	1.0	0.02%	17.8	0.04%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.208e-01	1.0000	54.0	0.97%	494.5	1.13%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.113e-01	1.0000	858.0	15.38%	6999.4	15.98%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.036e-01	1.0000	828.0	14.84%	6768.1	15.45%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.016e-01	1.0000	19.0	0.34%	195.1	0.45%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-9.608e-02	1.0000	292.0	5.23%	2467.3	5.63%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.299e-02	1.0000	1081.0	19.37%	8797.2	20.09%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.891e-02	1.0000	384.0	6.88%	3219.6	7.35%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-8.718e-02	1.0000	1794.0	32.15%	14458.5	33.01%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.370e-02	1.0000	2014.0	36.09%	16201.6	36.99%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-8.301e-02	1.0000	389.0	6.97%	3265.8	7.46%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-8.074e-02	1.0000	1260.0	22.58%	10238.5	23.38%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.253e-02	1.0000	92.0	1.65%	835.9	1.91%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.803e-02	1.0000	2041.0	36.58%	16466.8	37.60%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.175e-02	1.0000	289.0	5.18%	2485.2	5.67%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-4.340e-02	1.0000	3326.0	59.61%	26596.6	60.72%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-4.261e-02	1.0000	306.0	5.48%	2637.5	6.02%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.257e-02	1.0000	2382.0	42.69%	19231.4	43.91%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.851e-02	1.0000	115.0	2.06%	1068.8	2.44%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.666e-02	1.0000	439.0	7.87%	3757.2	8.58%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.527e-02	1.0000	815.0	14.61%	6807.6	15.54%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.293e-02	1.0000	229.0	4.10%	2037.1	4.65%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.135e-02	1.0000	245.0	4.39%	2174.9	4.97%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.085e-02	1.0000	2988.0	53.55%	24045.7	54.90%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.909e-02	1.0000	433.0	7.76%	3732.0	8.52%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.824e-02	1.0000	1023.0	18.33%	8509.9	19.43%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.722e-02	1.0000	926.0	16.59%	7735.4	17.66%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.641e-02	1.0000	2053.0	36.79%	16718.2	38.17%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.321e-02	1.0000	1.0	0.02%	34.5	0.08%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.192e-02	1.0000	164.0	2.94%	1521.6	3.47%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.147e-02	1.0000	85.0	1.52%	841.5	1.92%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.074e-02	1.0000	938.0	16.81%	7873.3	17.98%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.059e-02	1.0000	402.0	7.20%	3514.4	8.02%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.022e-02	1.0000	1167.0	20.91%	9718.5	22.19%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-9.670e-03	1.0000	9.0	0.16%	137.0	0.31%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.511e-03	1.0000	3461.0	62.03%	27850.1	63.59%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-6.261e-03	1.0000	247.0	4.43%	2253.0	5.14%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-5.186e-03	1.0000	619.0	11.09%	5341.1	12.19%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.466e-03	1.0000	61.0	1.09%	653.2	1.49%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.630e-03	1.0000	2084.0	37.35%	17120.6	39.09%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.220e-03	1.0000	82.0	1.47%	852.0	1.95%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.948e-03	1.0000	117.0	2.10%	1179.8	2.69%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.678e-03	1.0000	177.0	3.17%	1709.1	3.90%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.598e-03	1.0000	1358.0	24.34%	11409.5	26.05%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.539e-03	1.0000	1493.0	26.76%	12494.2	28.53%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.066e-03	1.0000	45.0	0.81%	536.0	1.22%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.500e-04	1.0000	374.0	6.70%	3415.1	7.80%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-7.690e-04	1.0000	724.0	12.97%	6323.5	14.44%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.420e-04	1.0000	1287.0	23.06%	10908.9	24.91%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.880e-04	1.0000	570.0	10.22%	5079.3	11.60%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.650e-04	1.0000	938.0	16.81%	8104.7	18.50%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.640e-04	1.0000	248.0	4.44%	2370.2	5.41%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.300e-04	1.0000	68.0	1.22%	774.4	1.77%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.540e-04	1.0000	4128.0	73.98%	33253.2	75.92%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.290e-04	1.0000	1763.0	31.59%	14801.7	33.79%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.120e-04	1.0000	43.0	0.77%	548.4	1.25%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.030e-04	1.0000	22.0	0.39%	333.3	0.76%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.410e-04	1.0000	138.0	2.47%	1445.0	3.30%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.190e-04	1.0000	959.0	17.19%	8361.0	19.09%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.030e-04	1.0000	1289.0	23.10%	11050.3	25.23%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.700e-05	1.0000	597.0	10.70%	5392.5	12.31%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.000e-05	1.0000	106.0	1.90%	1171.5	2.67%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.100e-05	1.0000	3317.0	59.44%	27200.5	62.10%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.000e-05	1.0000	135.0	2.42%	1487.2	3.40%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.000e-06	1.0000	85.0	1.52%	1040.1	2.37%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-3.000e-06	1.0000	1221.0	21.88%	10708.8	24.45%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.000e-06	1.0000	40.0	0.72%	591.8	1.35%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.000e-06	1.0000	1246.0	22.33%	10918.9	24.93%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.000e-06	1.0000	1792.0	32.11%	15365.2	35.08%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.000e-06	1.0000	1490.0	26.70%	12962.9	29.60%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	47.0	0.84%	698.3	1.59%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-0.000e+00	1.0000	715.0	12.81%	6632.2	15.14%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	57.0	1.02%	818.9	1.87%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-0.000e+00	1.0000	575.0	10.30%	5498.8	12.55%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	2034.0	36.45%	17457.2	39.86%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	95.0	1.70%	1225.9	2.80%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	984.0	17.63%	8989.9	20.53%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-0.000e+00	1.0000	506.0	9.07%	4980.8	11.37%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	2622.0	46.99%	22236.9	50.77%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-0.000e+00	1.0000	1089.0	19.52%	10045.9	22.94%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-0.000e+00	1.0000	795.0	14.25%	7608.4	17.37%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-0.000e+00	1.0000	4232.0	75.84%	34771.3	79.39%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	3922.0	70.29%	32478.2	74.15%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	3192.0	57.20%	27054.2	61.77%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-0.000e+00	1.0000	1070.0	19.18%	10104.6	23.07%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	258.0	4.62%	3019.0	6.89%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	913.0	16.36%	8792.8	20.08%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	349.0	6.25%	3894.8	8.89%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	199.0	3.57%	2506.5	5.72%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	259.0	4.64%	3086.0	7.05%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	2437.0	43.67%	21313.1	48.66%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-0.000e+00	1.0000	791.0	14.18%	7879.3	17.99%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-0.000e+00	1.0000	1190.0	21.33%	11304.5	25.81%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	0.000e+00	1.0000	1502.0	26.92%	16074.5	36.70%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	940.0	16.85%	11976.9	27.35%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	0.000e+00	1.0000	1481.0	26.54%	14653.2	33.46%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	1248.0	22.37%	15260.5	34.84%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	916.0	16.42%	15143.2	34.57%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	329.0	5.90%	5533.9	12.63%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	942.0	16.88%	12648.1	28.88%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	593.0	10.63%	8518.7	19.45%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	490.0	8.78%	7669.1	17.51%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	279.0	5.00%	4918.6	11.23%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	1152.0	20.65%	11462.1	26.17%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	1715.0	30.73%	19216.2	43.87%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	993.0	17.80%	12494.8	28.53%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	0.000e+00	1.0000	1152.0	20.65%	11133.7	25.42%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	0.000e+00	1.0000	878.0	15.73%	8901.2	20.32%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	0.000e+00	1.0000	1710.0	30.65%	15780.9	36.03%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	61.0	1.09%	1174.2	2.68%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	0.000e+00	1.0000	2090.0	37.46%	19263.8	43.98%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	810.0	14.52%	8342.2	19.05%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	2397.0	42.96%	25163.9	57.45%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	81.0	1.45%	1416.9	3.23%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	209.0	3.75%	6233.3	14.23%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	954.0	17.10%	9696.8	22.14%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	593.0	10.63%	6500.9	14.84%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	1644.0	29.46%	15481.0	35.35%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	1405.0	25.18%	13950.8	31.85%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	0.000e+00	1.0000	1650.0	29.57%	16042.6	36.63%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	0.000e+00	1.0000	3991.0	71.52%	33806.5	77.19%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	1432.0	25.66%	16862.4	38.50%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	0.000e+00	1.0000	1787.0	32.03%	17970.2	41.03%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	1358.0	24.34%	17736.1	40.49%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	688.0	12.33%	10444.6	23.85%