Information for 5-YTGSCARC (Motif 3)

G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C
Reverse Opposite:
T A C G A G T C G C A T A C T G A T G C A T G C C G T A C T A G
p-value:1e-90
log p-value:-2.079e+02
Information Content per bp:1.689
Number of Target Sequences with motif2162.0
Percentage of Target Sequences with motif41.04%
Number of Background Sequences with motif12388.5
Percentage of Background Sequences with motif28.05%
Average Position of motif in Targets283.0 +/- 199.7bp
Average Position of motif in Background244.8 +/- 159.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:YTGSCARC
TTGCCAAG
 G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:2
Score:0.90
Offset:1
Orientation:forward strand
Alignment:YTGSCARC-
-TGCCAGCB
 G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C A C G T
A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-YTGSCARC
CGTGCCAAG
 A C G T G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--YTGSCARC
NNTTGGCANN
 A C G T A C G T G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.78
Offset:0
Orientation:forward strand
Alignment:YTGSCARC-
ATGCCAACC
 G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:YTGSCARC-
-TGTCANYT
 G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C A C G T
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.77
Offset:0
Orientation:forward strand
Alignment:YTGSCARC
YTGWCADY
 G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--YTGSCARC
VGCTGWCAVB
 A C G T A C G T G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

NFIC/MA0161.2/Jaspar

Match Rank:9
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---YTGSCARC
TACTTGGCAGA
 A C G T A C G T A C G T G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.74
Offset:0
Orientation:forward strand
Alignment:YTGSCARC
TTGACAGC
 G A T C G C A T A T C G A T C G A G T C C G T A T C A G A T G C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C