Information for 9-ATGAATGG (Motif 5)

C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G
Reverse Opposite:
A T G C A G T C C G T A A C G T A C G T A G T C C G T A A C G T
p-value:1e-60
log p-value:-1.403e+02
Information Content per bp:1.885
Number of Target Sequences with motif1188.0
Percentage of Target Sequences with motif22.55%
Number of Background Sequences with motif6209.0
Percentage of Background Sequences with motif14.06%
Average Position of motif in Targets287.8 +/- 207.8bp
Average Position of motif in Background243.5 +/- 150.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.85
Offset:-6
Orientation:reverse strand
Alignment:------ATGAATGG
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----ATGAATGG----
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.74
Offset:-7
Orientation:forward strand
Alignment:-------ATGAATGG-
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATGAATGG
GGYAATGAAA--
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T A C G T

ZNF24/MA1124.1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATGG---
GAATGAATGAATG
 A C G T A C G T C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G A C G T A C G T A C G T
C T A G T C G A C T G A A G C T C T A G C T G A T C G A A G C T C T A G T C G A C T G A A G C T C T A G

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATGAATGG
GGCMATGAAA--
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----ATGAATGG---
NNNTATTGAATTGNNN
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATGAATGG--
ATGAATATTC
 C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G A C G T A C G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATGAATGG--
ATGMATATDC
 C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G A C G T A C G T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATGAATGG
CATGAC---
 A C G T C G T A A C G T A C T G C G T A G T C A C G A T T C A G A T C G
T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T