Information for 13-RGCCAAGY (Motif 7)

C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T
Reverse Opposite:
T C G A A T G C A G C T C A G T A T C G C T A G A G T C A G C T
p-value:1e-38
log p-value:-8.760e+01
Information Content per bp:1.736
Number of Target Sequences with motif1886.0
Percentage of Target Sequences with motif35.80%
Number of Background Sequences with motif12184.1
Percentage of Background Sequences with motif27.59%
Average Position of motif in Targets292.0 +/- 211.9bp
Average Position of motif in Background244.2 +/- 157.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--RGCCAAGY-
NNTGCCAAGNN
 A C G T A C G T C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--RGCCAAGY
CGTGCCAAG-
 A C G T A C G T C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--RGCCAAGY
GGTGCCAAGT
 A C G T A C G T C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---RGCCAAGY-
ACTAGCCAATCA
 A C G T A C G T A C G T C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-RGCCAAGY--
AAGGCAAGTGT
 A C G T C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T A C G T A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:RGCCAAGY--
AGCCAATCGG
 C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T A C G T A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-RGCCAAGY
TTGCCAAG-
 A C G T C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-RGCCAAGY
AGGCCTAG-
 A C G T C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RGCCAAGY--
TGCCCAGNHW
 C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T A C G T A C G T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RGCCAAGY
ATGCCAACC
 A C G T C T G A C T A G A G T C T A G C G T C A T C G A T A C G A G C T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C