Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5268)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44143)	% of Background Sequences with Motif
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-309	-7.128e+02	0.0000	1719.0	32.63%	5579.7	12.64%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-182	-4.193e+02	0.0000	2138.0	40.58%	10051.9	22.76%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-179	-4.133e+02	0.0000	1328.0	25.21%	4896.4	11.09%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-170	-3.932e+02	0.0000	1496.0	28.40%	6029.5	13.65%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-167	-3.858e+02	0.0000	1201.0	22.80%	4323.7	9.79%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-160	-3.687e+02	0.0000	1314.0	24.94%	5085.9	11.52%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-157	-3.629e+02	0.0000	1491.0	28.30%	6207.0	14.06%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-149	-3.434e+02	0.0000	1586.0	30.11%	6956.3	15.75%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-148	-3.417e+02	0.0000	939.0	17.82%	3112.4	7.05%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-139	-3.202e+02	0.0000	2451.0	46.53%	13253.7	30.01%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-138	-3.184e+02	0.0000	2030.0	38.53%	10189.6	23.07%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-118	-2.729e+02	0.0000	706.0	13.40%	2229.4	5.05%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-117	-2.711e+02	0.0000	2576.0	48.90%	14767.3	33.44%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-95	-2.205e+02	0.0000	3343.0	63.46%	21723.3	49.19%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-87	-2.022e+02	0.0000	616.0	11.69%	2121.7	4.80%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-87	-2.009e+02	0.0000	2838.0	53.87%	17793.0	40.29%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-86	-1.989e+02	0.0000	515.0	9.78%	1611.4	3.65%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-86	-1.982e+02	0.0000	955.0	18.13%	4116.1	9.32%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-62	-1.434e+02	0.0000	522.0	9.91%	1957.4	4.43%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-57	-1.315e+02	0.0000	2735.0	51.92%	18094.3	40.98%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-55	-1.285e+02	0.0000	1270.0	24.11%	6929.0	15.69%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-48	-1.113e+02	0.0000	183.0	3.47%	414.0	0.94%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-47	-1.094e+02	0.0000	977.0	18.55%	5139.7	11.64%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-46	-1.077e+02	0.0000	1165.0	22.11%	6469.4	14.65%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-45	-1.043e+02	0.0000	724.0	13.74%	3511.8	7.95%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-45	-1.041e+02	0.0000	368.0	6.99%	1354.4	3.07%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-39	-9.161e+01	0.0000	319.0	6.06%	1164.5	2.64%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-37	-8.711e+01	0.0000	668.0	12.68%	3333.6	7.55%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-36	-8.518e+01	0.0000	510.0	9.68%	2340.5	5.30%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-32	-7.464e+01	0.0000	722.0	13.71%	3847.8	8.71%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-31	-7.140e+01	0.0000	172.0	3.26%	512.1	1.16%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-27	-6.373e+01	0.0000	177.0	3.36%	574.6	1.30%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-26	-6.200e+01	0.0000	1638.0	31.09%	10815.5	24.49%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-26	-6.004e+01	0.0000	1422.0	26.99%	9198.8	20.83%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-25	-5.777e+01	0.0000	746.0	14.16%	4259.6	9.65%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-24	-5.708e+01	0.0000	151.0	2.87%	478.0	1.08%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-23	-5.355e+01	0.0000	761.0	14.45%	4435.4	10.04%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-23	-5.333e+01	0.0000	1194.0	22.67%	7618.6	17.25%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-23	-5.317e+01	0.0000	804.0	15.26%	4749.4	10.76%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-22	-5.263e+01	0.0000	549.0	10.42%	2971.2	6.73%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-21	-5.063e+01	0.0000	1446.0	27.45%	9603.7	21.75%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-21	-5.017e+01	0.0000	2054.0	38.99%	14408.4	32.63%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-21	-5.007e+01	0.0000	1196.0	22.70%	7706.4	17.45%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-20	-4.664e+01	0.0000	1053.0	19.99%	6707.4	15.19%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-19	-4.564e+01	0.0000	1052.0	19.97%	6722.0	15.22%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-19	-4.502e+01	0.0000	1203.0	22.84%	7878.9	17.84%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-17	-3.965e+01	0.0000	813.0	15.43%	5077.7	11.50%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-17	-3.927e+01	0.0000	911.0	17.29%	5812.2	13.16%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-16	-3.877e+01	0.0000	2831.0	53.74%	21157.4	47.91%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-16	-3.766e+01	0.0000	495.0	9.40%	2827.8	6.40%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-16	-3.722e+01	0.0000	947.0	17.98%	6130.0	13.88%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-16	-3.687e+01	0.0000	157.0	2.98%	633.8	1.44%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-15	-3.647e+01	0.0000	1630.0	30.94%	11438.9	25.90%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-15	-3.605e+01	0.0000	1891.0	35.90%	13536.0	30.65%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-14	-3.429e+01	0.0000	2721.0	51.65%	20401.4	46.20%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-14	-3.389e+01	0.0000	1631.0	30.96%	11529.7	26.11%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-14	-3.371e+01	0.0000	2752.0	52.24%	20682.1	46.84%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-14	-3.285e+01	0.0000	700.0	13.29%	4393.1	9.95%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-14	-3.265e+01	0.0000	875.0	16.61%	5701.9	12.91%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-13	-3.223e+01	0.0000	1372.0	26.04%	9538.1	21.60%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-13	-3.219e+01	0.0000	1315.0	24.96%	9093.8	20.59%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-13	-3.178e+01	0.0000	1683.0	31.95%	12014.5	27.21%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-12	-2.858e+01	0.0000	636.0	12.07%	4018.2	9.10%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-12	-2.823e+01	0.0000	882.0	16.74%	5870.9	13.29%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-12	-2.806e+01	0.0000	1314.0	24.94%	9218.1	20.87%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-11	-2.700e+01	0.0000	1047.0	19.87%	7171.1	16.24%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-11	-2.644e+01	0.0000	628.0	11.92%	4009.8	9.08%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-11	-2.641e+01	0.0000	1339.0	25.42%	9471.3	21.45%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-11	-2.625e+01	0.0000	1068.0	20.27%	7357.2	16.66%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-10	-2.515e+01	0.0000	243.0	4.61%	1294.0	2.93%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-10	-2.496e+01	0.0000	2367.0	44.93%	17841.8	40.40%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-10	-2.487e+01	0.0000	1179.0	22.38%	8267.4	18.72%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-10	-2.434e+01	0.0000	1146.0	21.75%	8027.2	18.18%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-10	-2.410e+01	0.0000	1476.0	28.02%	10642.3	24.10%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-10	-2.403e+01	0.0000	426.0	8.09%	2587.5	5.86%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-10	-2.372e+01	0.0000	456.0	8.66%	2810.3	6.36%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-9	-2.263e+01	0.0000	154.0	2.92%	744.2	1.69%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-9	-2.258e+01	0.0000	1117.0	21.20%	7861.8	17.80%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-9	-2.242e+01	0.0000	376.0	7.14%	2261.6	5.12%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-9	-2.239e+01	0.0000	1804.0	34.24%	13348.8	30.23%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-9	-2.229e+01	0.0000	294.0	5.58%	1685.8	3.82%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-9	-2.178e+01	0.0000	1612.0	30.60%	11824.3	26.78%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-8	-2.036e+01	0.0000	1069.0	20.29%	7565.8	17.13%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-8	-1.994e+01	0.0000	173.0	3.28%	899.4	2.04%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-8	-1.934e+01	0.0000	1356.0	25.74%	9876.8	22.37%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-8	-1.927e+01	0.0000	716.0	13.59%	4867.5	11.02%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-8	-1.850e+01	0.0000	103.0	1.96%	469.1	1.06%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-7	-1.831e+01	0.0000	1347.0	25.57%	9848.7	22.30%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-7	-1.825e+01	0.0000	459.0	8.71%	2959.7	6.70%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-7	-1.778e+01	0.0000	4136.0	78.51%	33244.6	75.28%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-7	-1.734e+01	0.0000	1299.0	24.66%	9507.9	21.53%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-7	-1.691e+01	0.0000	330.0	6.26%	2045.7	4.63%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-7	-1.679e+01	0.0000	304.0	5.77%	1860.8	4.21%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-7	-1.678e+01	0.0000	1234.0	23.42%	9013.5	20.41%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-7	-1.650e+01	0.0000	2219.0	42.12%	17028.2	38.56%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-7	-1.628e+01	0.0000	1205.0	22.87%	8804.0	19.94%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-7	-1.617e+01	0.0000	3011.0	57.16%	23658.5	53.58%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-6	-1.526e+01	0.0000	358.0	6.80%	2288.3	5.18%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-6	-1.500e+01	0.0000	1733.0	32.90%	13123.7	29.72%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-6	-1.498e+01	0.0000	225.0	4.27%	1333.1	3.02%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-6	-1.481e+01	0.0000	1421.0	26.97%	10604.9	24.02%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-6	-1.451e+01	0.0000	337.0	6.40%	2152.3	4.87%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-6	-1.434e+01	0.0000	1952.0	37.05%	14950.8	33.86%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-6	-1.422e+01	0.0000	570.0	10.82%	3913.2	8.86%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-6	-1.414e+01	0.0000	287.0	5.45%	1795.3	4.07%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-6	-1.401e+01	0.0000	420.0	7.97%	2782.8	6.30%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-5	-1.354e+01	0.0000	346.0	6.57%	2243.4	5.08%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.330e+01	0.0000	727.0	13.80%	5160.2	11.69%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-5	-1.296e+01	0.0000	1398.0	26.54%	10514.9	23.81%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-5	-1.294e+01	0.0000	2753.0	52.26%	21683.0	49.10%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-5	-1.273e+01	0.0000	515.0	9.78%	3542.8	8.02%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-5	-1.212e+01	0.0000	547.0	10.38%	3810.0	8.63%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-5	-1.202e+01	0.0000	784.0	14.88%	5659.2	12.82%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-5	-1.178e+01	0.0000	715.0	13.57%	5128.4	11.61%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-5	-1.171e+01	0.0000	1287.0	24.43%	9686.2	21.93%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-5	-1.168e+01	0.0000	548.0	10.40%	3834.0	8.68%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-5	-1.162e+01	0.0000	255.0	4.84%	1621.9	3.67%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-4	-1.139e+01	0.0000	215.0	4.08%	1335.7	3.02%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-4	-1.133e+01	0.0000	1915.0	36.35%	14827.9	33.58%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-4	-1.080e+01	0.0001	1135.0	21.55%	8512.4	19.28%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-4	-1.076e+01	0.0001	1657.0	31.45%	12748.3	28.87%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-4	-1.045e+01	0.0001	364.0	6.91%	2467.4	5.59%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-4	-1.030e+01	0.0001	95.0	1.80%	513.3	1.16%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-4	-1.029e+01	0.0001	1830.0	34.74%	14197.8	32.15%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-4	-1.024e+01	0.0001	181.0	3.44%	1115.8	2.53%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-4	-9.695e+00	0.0002	984.0	18.68%	7361.2	16.67%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-4	-9.550e+00	0.0002	675.0	12.81%	4912.4	11.12%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-4	-9.548e+00	0.0002	107.0	2.03%	606.5	1.37%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-4	-9.488e+00	0.0003	393.0	7.46%	2721.0	6.16%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-4	-9.477e+00	0.0003	1175.0	22.30%	8910.1	20.18%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-3	-8.994e+00	0.0004	532.0	10.10%	3815.4	8.64%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-8.869e+00	0.0005	352.0	6.68%	2428.5	5.50%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-3	-8.790e+00	0.0005	1972.0	37.43%	15474.0	35.04%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-3	-8.218e+00	0.0009	559.0	10.61%	4061.0	9.20%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-3	-7.838e+00	0.0013	125.0	2.37%	764.0	1.73%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-7.729e+00	0.0014	693.0	13.15%	5145.6	11.65%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-3	-7.720e+00	0.0014	133.0	2.52%	824.1	1.87%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-7.694e+00	0.0014	1997.0	37.91%	15765.2	35.70%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-3	-7.487e+00	0.0017	23.0	0.44%	88.2	0.20%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-7.444e+00	0.0018	188.0	3.57%	1234.8	2.80%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-7.444e+00	0.0018	188.0	3.57%	1234.8	2.80%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-3	-7.414e+00	0.0018	1126.0	21.37%	8645.7	19.58%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-7.321e+00	0.0020	451.0	8.56%	3255.5	7.37%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-3	-7.305e+00	0.0020	455.0	8.64%	3287.6	7.44%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-3	-7.293e+00	0.0020	34.0	0.65%	154.4	0.35%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-7.072e+00	0.0025	1367.0	25.95%	10632.6	24.08%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-3	-7.069e+00	0.0025	466.0	8.85%	3384.0	7.66%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-3	-6.913e+00	0.0029	208.0	3.95%	1399.1	3.17%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.814e+00	0.0032	769.0	14.60%	5804.8	13.15%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-2	-6.787e+00	0.0032	1215.0	23.06%	9413.3	21.32%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-6.770e+00	0.0033	784.0	14.88%	5927.1	13.42%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-6.673e+00	0.0036	16.0	0.30%	55.7	0.13%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-6.668e+00	0.0036	1304.0	24.75%	10148.3	22.98%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-6.668e+00	0.0036	2067.0	39.24%	16432.7	37.21%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.620e+00	0.0037	867.0	16.46%	6604.9	14.96%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-6.583e+00	0.0038	945.0	17.94%	7236.8	16.39%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-2	-6.538e+00	0.0039	138.0	2.62%	888.6	2.01%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-6.420e+00	0.0044	831.0	15.77%	6328.0	14.33%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-6.227e+00	0.0053	118.0	2.24%	749.4	1.70%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-2	-6.076e+00	0.0061	921.0	17.48%	7078.0	16.03%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-2	-6.066e+00	0.0062	542.0	10.29%	4035.6	9.14%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-5.833e+00	0.0077	85.0	1.61%	519.1	1.18%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-5.821e+00	0.0077	162.0	3.08%	1086.1	2.46%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-5.821e+00	0.0077	162.0	3.08%	1086.1	2.46%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-5.378e+00	0.0120	1306.0	24.79%	10270.9	23.26%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-4.852e+00	0.0201	1121.0	21.28%	8801.7	19.93%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-2	-4.828e+00	0.0205	148.0	2.81%	1011.9	2.29%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-4.804e+00	0.0209	299.0	5.68%	2180.9	4.94%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-4.776e+00	0.0213	271.0	5.14%	1962.9	4.45%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-4.664e+00	0.0237	558.0	10.59%	4247.4	9.62%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-2	-4.648e+00	0.0240	556.0	10.55%	4232.7	9.59%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-4.551e+00	0.0263	695.0	13.19%	5359.4	12.14%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-4.479e+00	0.0281	679.0	12.89%	5235.5	11.86%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-4.476e+00	0.0281	856.0	16.25%	6671.9	15.11%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-4.434e+00	0.0290	204.0	3.87%	1455.5	3.30%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-1	-4.384e+00	0.0303	710.0	13.48%	5493.5	12.44%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-1	-4.348e+00	0.0313	60.0	1.14%	370.7	0.84%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-4.153e+00	0.0378	1813.0	34.42%	14576.2	33.01%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-3.820e+00	0.0524	123.0	2.33%	854.4	1.93%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-1	-3.777e+00	0.0544	1322.0	25.09%	10557.5	23.91%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.724e+00	0.0571	369.0	7.00%	2793.0	6.32%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-1	-3.702e+00	0.0580	1341.0	25.46%	10722.2	24.28%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.691e+00	0.0583	144.0	2.73%	1020.6	2.31%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.628e+00	0.0618	210.0	3.99%	1537.3	3.48%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.551e+00	0.0664	378.0	7.18%	2876.0	6.51%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-3.539e+00	0.0668	43.0	0.82%	264.7	0.60%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.537e+00	0.0668	63.0	1.20%	410.8	0.93%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.491e+00	0.0694	382.0	7.25%	2912.7	6.60%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.464e+00	0.0709	1042.0	19.78%	8286.7	18.77%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.359e+00	0.0783	128.0	2.43%	909.8	2.06%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.322e+00	0.0809	100.0	1.90%	695.6	1.58%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-3.306e+00	0.0818	2829.0	53.70%	23166.9	52.46%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.173e+00	0.0929	341.0	6.47%	2604.4	5.90%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-3.164e+00	0.0932	441.0	8.37%	3410.6	7.72%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-1	-3.152e+00	0.0939	1170.0	22.21%	9374.5	21.23%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-3.117e+00	0.0967	300.0	5.69%	2279.4	5.16%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.072e+00	0.1007	269.0	5.11%	2034.9	4.61%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.941e+00	0.1142	223.0	4.23%	1675.9	3.80%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.846e+00	0.1249	116.0	2.20%	836.7	1.89%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.698e+00	0.1441	1294.0	24.56%	10455.5	23.68%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.692e+00	0.1442	836.0	15.87%	6677.1	15.12%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.640e+00	0.1512	371.0	7.04%	2884.2	6.53%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.631e+00	0.1518	662.0	12.57%	5256.3	11.90%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.581e+00	0.1589	1550.0	29.42%	12594.4	28.52%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-2.534e+00	0.1656	1999.0	37.95%	16338.9	37.00%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.506e+00	0.1695	560.0	10.63%	4434.0	10.04%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-2.421e+00	0.1837	1311.0	24.89%	10634.6	24.08%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.394e+00	0.1878	617.0	11.71%	4912.2	11.12%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.326e+00	0.2000	1133.0	21.51%	9173.4	20.77%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.324e+00	0.2000	214.0	4.06%	1640.8	3.72%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-2.316e+00	0.2002	297.0	5.64%	2310.5	5.23%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.315e+00	0.2002	493.0	9.36%	3905.2	8.84%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.283e+00	0.2049	122.0	2.32%	908.4	2.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.228e+00	0.2156	10.0	0.19%	53.5	0.12%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-2.212e+00	0.2179	5.0	0.09%	21.9	0.05%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.146e+00	0.2318	593.0	11.26%	4742.8	10.74%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.128e+00	0.2348	692.0	13.14%	5558.1	12.59%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.109e+00	0.2382	153.0	2.90%	1164.0	2.64%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.104e+00	0.2383	233.0	4.42%	1808.9	4.10%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.064e+00	0.2470	61.0	1.16%	438.3	0.99%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.031e+00	0.2541	240.0	4.56%	1870.6	4.24%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.008e+00	0.2588	197.0	3.74%	1524.0	3.45%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.001e+00	0.2595	1128.0	21.41%	9179.1	20.79%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.989e+00	0.2615	14.0	0.27%	84.5	0.19%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.771e+00	0.3238	655.0	12.43%	5298.0	12.00%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.758e+00	0.3266	1122.0	21.30%	9168.9	20.76%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.744e+00	0.3296	777.0	14.75%	6310.2	14.29%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.732e+00	0.3323	256.0	4.86%	2024.7	4.59%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.687e+00	0.3459	658.0	12.49%	5334.4	12.08%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.683e+00	0.3459	1867.0	35.44%	15387.4	34.85%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.517e+00	0.4065	966.0	18.34%	7913.8	17.92%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.497e+00	0.4128	148.0	2.81%	1163.4	2.63%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.495e+00	0.4128	330.0	6.26%	2653.7	6.01%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.472e+00	0.4196	396.0	7.52%	3199.8	7.25%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.434e+00	0.4341	557.0	10.57%	4534.2	10.27%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.408e+00	0.4437	1656.0	31.44%	13684.0	30.99%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.396e+00	0.4473	566.0	10.74%	4614.6	10.45%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.395e+00	0.4473	363.0	6.89%	2936.0	6.65%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.359e+00	0.4601	74.0	1.40%	572.1	1.30%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.333e+00	0.4701	2613.0	49.60%	21707.0	49.16%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.298e+00	0.4851	23.0	0.44%	168.0	0.38%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.264e+00	0.4994	10.0	0.19%	67.2	0.15%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.260e+00	0.4996	405.0	7.69%	3300.3	7.47%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.207e+00	0.5246	557.0	10.57%	4568.1	10.34%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.193e+00	0.5296	36.0	0.68%	274.8	0.62%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.166e+00	0.5421	187.0	3.55%	1511.0	3.42%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.136e+00	0.5564	536.0	10.17%	4405.5	9.98%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.134e+00	0.5564	285.0	5.41%	2323.6	5.26%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.094e+00	0.5753	916.0	17.39%	7577.4	17.16%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.031e+00	0.6108	643.0	12.21%	5314.5	12.03%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-9.763e-01	0.6423	25.0	0.47%	194.6	0.44%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-9.635e-01	0.6480	1245.0	23.63%	10356.0	23.45%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-9.070e-01	0.6830	733.0	13.91%	6090.7	13.79%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.841e-01	0.6961	2333.0	44.29%	19486.2	44.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.840e-01	0.6961	129.0	2.45%	1058.8	2.40%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-8.719e-01	0.6991	112.0	2.13%	918.1	2.08%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-8.576e-01	0.7064	347.0	6.59%	2877.1	6.52%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-8.508e-01	0.7085	3363.0	63.84%	28132.1	63.71%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-8.095e-01	0.7355	166.0	3.15%	1375.0	3.11%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-7.998e-01	0.7398	145.0	2.75%	1200.4	2.72%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-6.883e-01	0.8239	327.0	6.21%	2739.7	6.20%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.775e-01	0.8296	141.0	2.68%	1181.4	2.68%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.718e-01	0.8312	106.0	2.01%	888.2	2.01%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-6.713e-01	0.8312	221.0	4.20%	1853.9	4.20%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.202e-01	0.8687	819.0	15.55%	6883.9	15.59%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-5.906e-01	0.8914	1630.0	30.94%	13698.8	31.02%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-5.799e-01	0.8976	39.0	0.74%	332.4	0.75%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-5.184e-01	0.9510	931.0	17.67%	7857.4	17.79%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.169e-01	0.9510	265.0	5.03%	2251.9	5.10%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-4.984e-01	0.9630	290.0	5.50%	2466.4	5.59%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.954e-01	0.9630	1075.0	20.41%	9076.0	20.55%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.933e-01	0.9630	254.0	4.82%	2163.9	4.90%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.863e-01	0.9640	284.0	5.39%	2418.3	5.48%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-4.817e-01	0.9649	70.0	1.33%	605.7	1.37%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-4.680e-01	0.9747	638.0	12.11%	5409.2	12.25%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.517e-01	0.9872	239.0	4.54%	2045.5	4.63%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.409e-01	0.9942	1060.0	20.12%	8972.2	20.32%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.372e-01	0.9943	59.0	1.12%	516.3	1.17%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.352e-01	0.9943	144.0	2.73%	1242.8	2.81%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-4.308e-01	0.9943	244.0	4.63%	2092.3	4.74%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-4.150e-01	1.0000	1777.0	33.73%	15011.0	33.99%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.020e-01	1.0000	647.0	12.28%	5508.8	12.47%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.917e-01	1.0000	16.0	0.30%	147.5	0.33%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.849e-01	1.0000	95.0	1.80%	832.2	1.88%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.677e-01	1.0000	141.0	2.68%	1229.4	2.78%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-3.647e-01	1.0000	836.0	15.87%	7118.2	16.12%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.612e-01	1.0000	74.0	1.40%	655.5	1.48%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.357e-01	1.0000	140.0	2.66%	1227.9	2.78%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-3.120e-01	1.0000	304.0	5.77%	2634.7	5.97%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-3.073e-01	1.0000	263.0	4.99%	2286.8	5.18%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.880e-01	1.0000	70.0	1.33%	632.9	1.43%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-2.766e-01	1.0000	1262.0	23.96%	10758.7	24.36%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.754e-01	1.0000	2.0	0.04%	23.3	0.05%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.697e-01	1.0000	24.0	0.46%	229.7	0.52%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.538e-01	1.0000	797.0	15.13%	6844.6	15.50%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.510e-01	1.0000	534.0	10.14%	4615.8	10.45%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.399e-01	1.0000	9.0	0.17%	94.6	0.21%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.301e-01	1.0000	2757.0	52.33%	23356.6	52.89%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.134e-01	1.0000	19.0	0.36%	190.7	0.43%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.997e-01	1.0000	868.0	16.48%	7480.2	16.94%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.965e-01	1.0000	96.0	1.82%	879.4	1.99%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.582e-01	1.0000	42.0	0.80%	409.8	0.93%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.548e-01	1.0000	3400.0	64.54%	28805.2	65.23%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.410e-01	1.0000	206.0	3.91%	1859.4	4.21%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.363e-01	1.0000	1973.0	37.45%	16871.7	38.21%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.315e-01	1.0000	9.0	0.17%	105.7	0.24%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.305e-01	1.0000	718.0	13.63%	6261.7	14.18%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.216e-01	1.0000	900.0	17.08%	7819.9	17.71%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.206e-01	1.0000	2001.0	37.98%	17127.8	38.79%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.157e-01	1.0000	52.0	0.99%	511.6	1.16%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-9.843e-02	1.0000	2673.0	50.74%	22803.2	51.64%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.363e-02	1.0000	405.0	7.69%	3614.1	8.18%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.700e-02	1.0000	87.0	1.65%	844.5	1.91%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.249e-02	1.0000	431.0	8.18%	3861.4	8.74%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.644e-02	1.0000	1.0	0.02%	23.1	0.05%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.369e-02	1.0000	23.0	0.44%	258.7	0.59%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.062e-02	1.0000	1163.0	22.08%	10144.5	22.97%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-5.904e-02	1.0000	1459.0	27.70%	12659.1	28.67%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.473e-02	1.0000	592.0	11.24%	5275.2	11.95%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-5.095e-02	1.0000	2881.0	54.69%	24644.8	55.81%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-4.875e-02	1.0000	931.0	17.67%	8193.3	18.55%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.666e-02	1.0000	2088.0	39.64%	18003.3	40.77%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.539e-02	1.0000	622.0	11.81%	5551.1	12.57%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.709e-02	1.0000	381.0	7.23%	3481.2	7.88%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-3.630e-02	1.0000	2003.0	38.02%	17321.3	39.22%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.674e-02	1.0000	315.0	5.98%	2926.1	6.63%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.415e-02	1.0000	516.0	9.79%	4689.1	10.62%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-2.299e-02	1.0000	616.0	11.69%	5560.3	12.59%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.250e-02	1.0000	3988.0	75.70%	33943.2	76.87%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.162e-02	1.0000	825.0	15.66%	7368.8	16.69%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.681e-02	1.0000	67.0	1.27%	716.3	1.62%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.378e-02	1.0000	794.0	15.07%	7142.0	16.17%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.342e-02	1.0000	379.0	7.19%	3534.8	8.00%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.241e-02	1.0000	175.0	3.32%	1722.2	3.90%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.203e-02	1.0000	3218.0	61.09%	27637.0	62.58%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.191e-02	1.0000	116.0	2.20%	1185.5	2.68%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.120e-02	1.0000	256.0	4.86%	2455.7	5.56%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.558e-03	1.0000	1348.0	25.59%	11937.3	27.03%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-8.211e-03	1.0000	237.0	4.50%	2301.6	5.21%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-7.606e-03	1.0000	1009.0	19.15%	9046.6	20.49%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.937e-03	1.0000	422.0	8.01%	3955.8	8.96%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.822e-03	1.0000	280.0	5.32%	2696.5	6.11%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.657e-03	1.0000	2308.0	43.81%	20130.3	45.59%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-4.475e-03	1.0000	8.0	0.15%	145.7	0.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-4.405e-03	1.0000	1265.0	24.01%	11291.6	25.57%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.196e-03	1.0000	909.0	17.26%	8235.8	18.65%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.816e-03	1.0000	911.0	17.29%	8284.4	18.76%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.953e-03	1.0000	107.0	2.03%	1164.8	2.64%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.879e-03	1.0000	47.0	0.89%	580.6	1.31%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.798e-03	1.0000	1284.0	24.37%	11532.4	26.12%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.538e-03	1.0000	244.0	4.63%	2443.1	5.53%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.155e-03	1.0000	2016.0	38.27%	17802.4	40.31%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-9.500e-04	1.0000	963.0	18.28%	8816.5	19.97%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-8.510e-04	1.0000	3333.0	63.27%	28847.1	65.32%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.680e-04	1.0000	1459.0	27.70%	13101.2	29.67%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-6.930e-04	1.0000	46.0	0.87%	592.4	1.34%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.870e-04	1.0000	137.0	2.60%	1501.2	3.40%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.160e-04	1.0000	140.0	2.66%	1536.3	3.48%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-2.910e-04	1.0000	159.0	3.02%	1719.6	3.89%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.530e-04	1.0000	583.0	11.07%	5601.5	12.68%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.100e-04	1.0000	365.0	6.93%	3660.7	8.29%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.700e-05	1.0000	3197.0	60.69%	27920.6	63.23%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.400e-05	1.0000	104.0	1.97%	1237.5	2.80%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.400e-05	1.0000	40.0	0.76%	579.6	1.31%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.200e-05	1.0000	21.0	0.40%	372.7	0.84%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.400e-05	1.0000	75.0	1.42%	976.9	2.21%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.200e-05	1.0000	48.0	0.91%	693.5	1.57%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.000e-05	1.0000	2588.0	49.13%	22987.2	52.06%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-7.000e-06	1.0000	1708.0	32.42%	15568.7	35.26%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.000e-06	1.0000	66.0	1.25%	900.4	2.04%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.000e-06	1.0000	1211.0	22.99%	11315.9	25.63%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.000e-06	1.0000	564.0	10.71%	5616.1	12.72%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-2.000e-06	1.0000	1185.0	22.49%	11124.8	25.19%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.000e-06	1.0000	1982.0	37.62%	18013.5	40.79%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.000e-06	1.0000	1742.0	33.07%	15979.6	36.19%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.000e-06	1.0000	91.0	1.73%	1207.7	2.73%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	977.0	18.55%	9432.0	21.36%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	56.0	1.06%	872.8	1.98%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	96.0	1.82%	1311.1	2.97%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-0.000e+00	1.0000	1436.0	27.26%	13508.6	30.59%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-0.000e+00	1.0000	708.0	13.44%	7173.6	16.24%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-0.000e+00	1.0000	780.0	14.81%	7834.3	17.74%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-0.000e+00	1.0000	500.0	9.49%	5331.4	12.07%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	255.0	4.84%	3013.4	6.82%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	3089.0	58.64%	27703.7	62.74%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	3798.0	72.10%	33498.0	75.86%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-0.000e+00	1.0000	1055.0	20.03%	10485.5	23.74%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	191.0	3.63%	2479.7	5.62%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	359.0	6.81%	4176.1	9.46%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	902.0	17.12%	9265.7	20.98%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-0.000e+00	1.0000	1046.0	19.86%	10565.9	23.93%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	264.0	5.01%	3308.3	7.49%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	79.0	1.50%	1355.2	3.07%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	2390.0	45.37%	22319.2	50.54%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-0.000e+00	1.0000	1172.0	22.25%	11897.4	26.94%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-0.000e+00	1.0000	877.0	16.65%	9258.7	20.97%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-0.000e+00	1.0000	4034.0	76.58%	35779.2	81.02%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-0.000e+00	1.0000	64.0	1.21%	1266.5	2.87%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-0.000e+00	1.0000	1673.0	31.76%	16395.4	37.13%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	0.000e+00	1.0000	1480.0	28.09%	16722.4	37.87%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	916.0	17.39%	12344.6	27.95%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	0.000e+00	1.0000	1448.0	27.49%	15306.9	34.66%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	1218.0	23.12%	15950.5	36.12%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	920.0	17.46%	15740.1	35.64%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	324.0	6.15%	6010.1	13.61%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	932.0	17.69%	13485.6	30.54%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	584.0	11.09%	9162.6	20.75%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	484.0	9.19%	8242.7	18.67%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	273.0	5.18%	5348.8	12.11%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	1136.0	21.56%	12361.3	27.99%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	1677.0	31.83%	19937.1	45.15%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	1009.0	19.15%	13072.9	29.60%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	0.000e+00	1.0000	1130.0	21.45%	11666.4	26.42%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	0.000e+00	1.0000	2039.0	38.71%	20013.0	45.32%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	808.0	15.34%	8973.3	20.32%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	2326.0	44.15%	26074.0	59.05%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	208.0	3.95%	6426.6	14.55%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	924.0	17.54%	10200.8	23.10%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	588.0	11.16%	6987.7	15.82%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	766.0	14.54%	8522.9	19.30%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	1584.0	30.07%	16441.7	37.23%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	1347.0	25.57%	14751.7	33.41%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	0.000e+00	1.0000	1618.0	30.71%	16678.1	37.77%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	0.000e+00	1.0000	3847.0	73.03%	34470.3	78.06%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	1404.0	26.65%	17776.6	40.26%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	0.000e+00	1.0000	1739.0	33.01%	18786.1	42.54%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	1351.0	25.65%	18612.5	42.15%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	685.0	13.00%	11003.8	24.92%