Information for 1-TAATTAYA (Motif 1)

G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A
Reverse Opposite:
C A G T T C G A G A C T G T C A C G T A A G C T G C A T C G T A
p-value:1e-329
log p-value:-7.583e+02
Information Content per bp:1.764
Number of Target Sequences with motif1898.0
Percentage of Target Sequences with motif34.01%
Number of Background Sequences with motif5929.7
Percentage of Background Sequences with motif13.53%
Average Position of motif in Targets240.9 +/- 166.5bp
Average Position of motif in Background231.4 +/- 150.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAYA
NCTAATTA--
 A C G T A C G T G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAYA-
YTAATTAVHT
 A C G T G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A A C G T
A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T

PH0022.1_Dlx3/Jaspar

Match Rank:3
Score:0.92
Offset:-6
Orientation:forward strand
Alignment:------TAATTAYA---
TCGCGATAATTACCGAC
 A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A A C G T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C

PH0020.1_Dlx1/Jaspar

Match Rank:4
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAYA----
ATTAATTANCTCAN
 A C G T A C G T G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A A C G T A C G T A C G T A C G T
T C G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A G A T C G A T C A C G T A G T C C T G A T A C G

MA0075.1_Prrx2/Jaspar

Match Rank:5
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TAATTAYA
TAATT---
 G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A
A G C T C G T A G T C A A C G T A G C T A C G T A C G T A C G T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:6
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAYA----
GTTAATTANCTCNN
 A C G T A C G T G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A A C G T A C G T A C G T A C G T
T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

PH0023.1_Dlx4/Jaspar

Match Rank:7
Score:0.90
Offset:-6
Orientation:forward strand
Alignment:------TAATTAYA---
GCGCTATAATTACCGAC
 A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A A C G T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C

PH0072.1_Hoxc8/Jaspar

Match Rank:8
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAYA----
ACNNTAATTACNNCAN
 A C G T A C G T A C G T A C G T G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A A C G T A C G T A C G T A C G T
T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

PH0021.1_Dlx2/Jaspar

Match Rank:9
Score:0.89
Offset:-6
Orientation:reverse strand
Alignment:------TAATTAYA--
CTGANNTAATTATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A A C G T A C G T
T A G C G A C T C A T G C T G A C T A G T A C G G A C T C G T A C G T A C G A T A C G T C T G A G A C T G A C T A G T C A G T C

PH0050.1_Hoxa3/Jaspar

Match Rank:10
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAYA----
ACTAATTANCNCNA
 A C G T A C G T G C A T C G T A C T G A A C G T C A G T C T G A A G C T G T C A A C G T A C G T A C G T A C G T
T C G A A G T C G A C T G T C A C G T A A C G T A C G T C T G A T A G C A G T C C A G T A G T C T C G A G T C A