Information for 22-CCTTGTRA (Motif 12)

A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A
Reverse Opposite:
C G A T G A C T G T C A G T A C C G T A C G T A T C A G A C T G
p-value:1e-22
log p-value:-5.262e+01
Information Content per bp:1.756
Number of Target Sequences with motif2069.0
Percentage of Target Sequences with motif37.08%
Number of Background Sequences with motif13507.9
Percentage of Background Sequences with motif30.83%
Average Position of motif in Targets276.5 +/- 198.6bp
Average Position of motif in Background231.8 +/- 145.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCTTGTRA
CTTTGT--
 A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CCTTGTRA-
CCWTTGTYYB
 A C G T A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A A C G T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CCTTGTRA
CCWTTGTY-
 A C G T A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CCTTGTRA
CCTTTGTT-
 A C G T A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CCTTGTRA-
YCTTTGTTCC
 A C G T A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A A C G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTGTRA----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTGTRA----
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

MA0514.1_Sox3/Jaspar

Match Rank:8
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCTTGTRA-
CCTTTGTTTT
 A C G T A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A A C G T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCTTGTRA-
CCATTGTTNY
 A C G T A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A A C G T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

MA0515.1_Sox6/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CCTTGTRA-
CCATTGTTTT
 A C G T A G T C A G T C A C G T A C G T A C T G A C G T C T G A G C T A A C G T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T