Information for 11-GCCAAAGTAAAC (Motif 12)

C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C
Reverse Opposite:
T C A G A G C T A C G T A C G T C G T A A G T C G A C T A G C T C A G T C A T G A T C G G A T C
p-value:1e-75
log p-value:-1.736e+02
Information Content per bp:1.590
Number of Target Sequences with motif1156.0
Percentage of Target Sequences with motif9.47%
Number of Background Sequences with motif1986.3
Percentage of Background Sequences with motif5.33%
Average Position of motif in Targets101.9 +/- 54.0bp
Average Position of motif in Background98.6 +/- 64.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAAGTAAAC---
TGCCAAAATAAACANN
 A C G T C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Foxa2/MA0047.2/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCCAAAGTAAAC-
-NCTAAGTAAACA
 C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:3
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GCCAAAGTAAAC-
---AAAGTAAACA
 C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GCCAAAGTAAAC-
---AAAGTAAACA
 C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GCCAAAGTAAAC-
-GCTAARTAAACA
 C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T
A C G T A T C G G A T C G C A T T C G A G C T A T C G A G C A T G T C A C G T A G T C A G A T C G C T A

FOXA1/MA0148.3/Jaspar

Match Rank:6
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GCCAAAGTAAAC-----
--CAAAGTAAACANNNN
 C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCCAAAGTAAAC----
-NCWRWGTAAACANSV
 C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GCCAAAGTAAAC-
---WAAGTAAAYA
 C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T
A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXC2/MA0846.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCCAAAGTAAAC---
---TAAGTAAACAAA
 C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

FOXF2/MA0030.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCCAAAGTAAAC---
-CAAACGTAAACAAT
 C T A G T A G C G T A C G T C A T C G A C T G A T C A G G C A T T G C A T G C A T C G A A G T C A C G T A C G T A C G T
A C G T A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T