Information for 25-CATAAATC (Motif 18)

A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T A C G T A C G T C G T A A C G T C T A G
p-value:1e-19
log p-value:-4.576e+01
Information Content per bp:1.959
Number of Target Sequences with motif184.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif261.1
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets103.8 +/- 54.7bp
Average Position of motif in Background110.1 +/- 61.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--CATAAATC-
GCCATAAATCA
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CATAAATC--
GGCCATAAATCAC
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CATAAATC-
GGCCATAAATCA
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--CATAAATC--
NCYATMAATCAY
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T A C G T
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CATAAATC-
NGYCATAAAWCH
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CATAAATC-
TCATCAATCA
 A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:7
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CATAAATC-
YCATCMATCA
 A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CATAAATC--
GYCATCMATCAT
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CATAAATC-
RGCCATYAATCA
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CATAAATC
GCAATAAAA-
 A C G T A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T