Information for 4-KCTTGGCA (Motif 5)

C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G A G T C A G T C C G T A C T G A T A C G G T A C
p-value:1e-189
log p-value:-4.361e+02
Information Content per bp:1.799
Number of Target Sequences with motif4804.0
Percentage of Target Sequences with motif39.34%
Number of Background Sequences with motif10080.3
Percentage of Background Sequences with motif27.06%
Average Position of motif in Targets100.4 +/- 55.1bp
Average Position of motif in Background99.6 +/- 66.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:KCTTGGCA--
-NTTGGCANN
 C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:KCTTGGCA--
NNTTGGCANN
 C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-KCTTGGCA--
TACTTGGCAGA
 A C G T C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:KCTTGGCA-
-CTTGGCAA
 C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C G T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:KCTTGGCA-
GGTTGGCAT
 C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C G T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:KCTTGGCA
VGCTGGCA
 C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----KCTTGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:KCTTGGCA-
NGTGGGCAT
 C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C G T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:KCTTGGCA
ARNTGACA
 C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.73
Offset:2
Orientation:forward strand
Alignment:KCTTGGCA--
--YTGWCADY
 C A T G A T G C A G C T A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C