Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 12209)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 37268)	% of Background Sequences with Motif
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-776	-1.789e+03	0.0000	2769.0	22.68%	2292.0	6.15%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-745	-1.717e+03	0.0000	2742.0	22.46%	2325.6	6.24%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-745	-1.716e+03	0.0000	2455.0	20.11%	1877.7	5.04%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-725	-1.671e+03	0.0000	2899.0	23.74%	2639.8	7.09%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-715	-1.648e+03	0.0000	2417.0	19.80%	1886.7	5.07%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-695	-1.601e+03	0.0000	2213.0	18.12%	1627.0	4.37%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-562	-1.295e+03	0.0000	1695.0	13.88%	1163.3	3.12%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-434	-9.993e+02	0.0000	1281.0	10.49%	850.0	2.28%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-228	-5.270e+02	0.0000	851.0	6.97%	686.4	1.84%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-209	-4.817e+02	0.0000	2005.0	16.42%	2939.7	7.89%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-205	-4.737e+02	0.0000	2687.0	22.01%	4503.2	12.09%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-190	-4.394e+02	0.0000	2275.0	18.63%	3658.3	9.82%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-189	-4.362e+02	0.0000	2010.0	16.46%	3073.1	8.25%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-186	-4.305e+02	0.0000	1426.0	11.68%	1856.7	4.98%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-180	-4.158e+02	0.0000	3828.0	31.35%	7565.3	20.31%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-146	-3.363e+02	0.0000	1085.0	8.89%	1383.3	3.71%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-137	-3.164e+02	0.0000	782.0	6.40%	853.4	2.29%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-133	-3.082e+02	0.0000	841.0	6.89%	974.2	2.62%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-132	-3.042e+02	0.0000	1818.0	14.89%	3047.4	8.18%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-112	-2.599e+02	0.0000	1310.0	10.73%	2045.8	5.49%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-112	-2.582e+02	0.0000	1031.0	8.44%	1454.6	3.91%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-103	-2.393e+02	0.0000	529.0	4.33%	535.9	1.44%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-102	-2.371e+02	0.0000	1977.0	16.19%	3681.6	9.88%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-90	-2.082e+02	0.0000	2465.0	20.19%	5046.7	13.55%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-87	-2.023e+02	0.0000	580.0	4.75%	688.1	1.85%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-85	-1.980e+02	0.0000	2084.0	17.07%	4128.2	11.08%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-85	-1.976e+02	0.0000	479.0	3.92%	514.4	1.38%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-85	-1.962e+02	0.0000	1308.0	10.71%	2253.8	6.05%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-78	-1.802e+02	0.0000	1350.0	11.06%	2413.6	6.48%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-74	-1.709e+02	0.0000	1878.0	15.38%	3747.1	10.06%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-72	-1.668e+02	0.0000	1774.0	14.53%	3507.7	9.42%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-72	-1.662e+02	0.0000	254.0	2.08%	194.1	0.52%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-71	-1.635e+02	0.0000	1237.0	10.13%	2214.8	5.95%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-70	-1.629e+02	0.0000	3036.0	24.86%	6837.2	18.36%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-69	-1.604e+02	0.0000	1596.0	13.07%	3096.3	8.31%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-69	-1.592e+02	0.0000	3868.0	31.68%	9165.3	24.61%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-67	-1.553e+02	0.0000	5196.0	42.56%	13011.0	34.93%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-67	-1.543e+02	0.0000	1673.0	13.70%	3318.8	8.91%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-65	-1.504e+02	0.0000	1365.0	11.18%	2577.7	6.92%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-65	-1.497e+02	0.0000	1263.0	10.34%	2334.9	6.27%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-64	-1.477e+02	0.0000	1477.0	12.10%	2864.1	7.69%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-64	-1.476e+02	0.0000	216.0	1.77%	159.4	0.43%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-63	-1.472e+02	0.0000	1987.0	16.27%	4156.2	11.16%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-61	-1.428e+02	0.0000	699.0	5.72%	1069.1	2.87%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-61	-1.412e+02	0.0000	3027.0	24.79%	6971.8	18.72%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-59	-1.379e+02	0.0000	1935.0	15.85%	4077.5	10.95%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-59	-1.364e+02	0.0000	228.0	1.87%	188.2	0.51%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-58	-1.356e+02	0.0000	220.0	1.80%	177.9	0.48%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-58	-1.347e+02	0.0000	1838.0	15.05%	3846.9	10.33%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-56	-1.310e+02	0.0000	2599.0	21.29%	5882.9	15.79%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-56	-1.294e+02	0.0000	608.0	4.98%	914.5	2.46%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-55	-1.283e+02	0.0000	257.0	2.10%	243.4	0.65%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-53	-1.240e+02	0.0000	352.0	2.88%	415.5	1.12%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-53	-1.225e+02	0.0000	1335.0	10.93%	2640.2	7.09%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-52	-1.215e+02	0.0000	3117.0	25.53%	7377.1	19.81%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-52	-1.210e+02	0.0000	1045.0	8.56%	1939.5	5.21%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-51	-1.185e+02	0.0000	2379.0	19.48%	5381.9	14.45%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-51	-1.177e+02	0.0000	1613.0	13.21%	3369.6	9.05%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-50	-1.170e+02	0.0000	1070.0	8.76%	2017.2	5.42%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-50	-1.163e+02	0.0000	649.0	5.32%	1043.3	2.80%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-46	-1.070e+02	0.0000	897.0	7.35%	1648.7	4.43%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-45	-1.046e+02	0.0000	1851.0	15.16%	4074.6	10.94%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-42	-9.815e+01	0.0000	2929.0	23.99%	7060.2	18.95%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-41	-9.545e+01	0.0000	1016.0	8.32%	1991.5	5.35%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-41	-9.516e+01	0.0000	1520.0	12.45%	3271.1	8.78%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-40	-9.348e+01	0.0000	786.0	6.44%	1444.4	3.88%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-37	-8.744e+01	0.0000	730.0	5.98%	1338.5	3.59%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-37	-8.621e+01	0.0000	1588.0	13.01%	3511.2	9.43%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-37	-8.599e+01	0.0000	597.0	4.89%	1034.8	2.78%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-37	-8.541e+01	0.0000	2485.0	20.35%	5945.8	15.96%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-36	-8.389e+01	0.0000	1461.0	11.97%	3194.4	8.58%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-36	-8.330e+01	0.0000	1669.0	13.67%	3747.5	10.06%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-35	-8.178e+01	0.0000	1202.0	9.84%	2537.8	6.81%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-34	-8.007e+01	0.0000	1380.0	11.30%	3009.4	8.08%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-34	-7.905e+01	0.0000	1577.0	12.92%	3535.6	9.49%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-33	-7.704e+01	0.0000	1337.0	10.95%	2918.8	7.84%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-33	-7.599e+01	0.0000	912.0	7.47%	1838.7	4.94%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-32	-7.504e+01	0.0000	2493.0	20.42%	6067.1	16.29%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-31	-7.294e+01	0.0000	1956.0	16.02%	4606.6	12.37%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-31	-7.276e+01	0.0000	1253.0	10.26%	2729.7	7.33%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-30	-7.083e+01	0.0000	3460.0	28.34%	8853.1	23.77%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-29	-6.880e+01	0.0000	1280.0	10.48%	2828.5	7.59%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-29	-6.749e+01	0.0000	1941.0	15.90%	4615.4	12.39%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-27	-6.278e+01	0.0000	2478.0	20.29%	6154.9	16.52%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-27	-6.258e+01	0.0000	1094.0	8.96%	2387.4	6.41%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-25	-5.957e+01	0.0000	3440.0	28.17%	8937.9	24.00%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-25	-5.845e+01	0.0000	2669.0	21.86%	6743.9	18.11%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-25	-5.821e+01	0.0000	963.0	7.89%	2078.4	5.58%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-24	-5.726e+01	0.0000	576.0	4.72%	1111.8	2.98%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-24	-5.562e+01	0.0000	2251.0	18.44%	5597.0	15.03%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-23	-5.324e+01	0.0000	2617.0	21.43%	6659.5	17.88%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-22	-5.232e+01	0.0000	1187.0	9.72%	2711.4	7.28%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-22	-5.151e+01	0.0000	1220.0	9.99%	2806.9	7.54%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-22	-5.147e+01	0.0000	2004.0	16.41%	4953.9	13.30%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-21	-4.861e+01	0.0000	3274.0	26.81%	8608.2	23.11%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-20	-4.834e+01	0.0000	3440.0	28.17%	9094.8	24.42%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-20	-4.748e+01	0.0000	1439.0	11.79%	3435.7	9.22%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-20	-4.624e+01	0.0000	190.0	1.56%	272.9	0.73%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-19	-4.572e+01	0.0000	518.0	4.24%	1030.2	2.77%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-19	-4.542e+01	0.0000	1464.0	11.99%	3524.1	9.46%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-17	-4.095e+01	0.0000	244.0	2.00%	405.0	1.09%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-17	-4.095e+01	0.0000	244.0	2.00%	405.0	1.09%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-17	-4.049e+01	0.0000	6810.0	55.77%	19318.2	51.86%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-17	-3.915e+01	0.0000	4923.0	40.32%	13628.3	36.59%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-16	-3.897e+01	0.0000	945.0	7.74%	2180.5	5.85%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-16	-3.807e+01	0.0000	1577.0	12.92%	3917.3	10.52%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-16	-3.786e+01	0.0000	413.0	3.38%	815.4	2.19%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-15	-3.663e+01	0.0000	407.0	3.33%	808.0	2.17%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-15	-3.653e+01	0.0000	796.0	6.52%	1805.0	4.85%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-15	-3.651e+01	0.0000	2366.0	19.38%	6169.8	16.56%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-15	-3.631e+01	0.0000	5915.0	48.44%	16672.2	44.76%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-15	-3.510e+01	0.0000	562.0	4.60%	1206.6	3.24%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-14	-3.391e+01	0.0000	220.0	1.80%	376.6	1.01%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-14	-3.385e+01	0.0000	2906.0	23.80%	7770.4	20.86%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-14	-3.353e+01	0.0000	906.0	7.42%	2125.8	5.71%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-14	-3.342e+01	0.0000	322.0	2.64%	617.9	1.66%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-14	-3.297e+01	0.0000	173.0	1.42%	275.1	0.74%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-13	-3.145e+01	0.0000	769.0	6.30%	1777.3	4.77%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-13	-3.028e+01	0.0000	815.0	6.67%	1911.8	5.13%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-12	-2.986e+01	0.0000	293.0	2.40%	565.8	1.52%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-12	-2.904e+01	0.0000	1363.0	11.16%	3431.6	9.21%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-12	-2.878e+01	0.0000	727.0	5.95%	1689.7	4.54%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-12	-2.797e+01	0.0000	309.0	2.53%	614.0	1.65%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-11	-2.737e+01	0.0000	608.0	4.98%	1385.7	3.72%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-11	-2.702e+01	0.0000	1535.0	12.57%	3942.3	10.58%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-11	-2.536e+01	0.0000	2512.0	20.57%	6775.8	18.19%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-10	-2.523e+01	0.0000	1385.0	11.34%	3544.5	9.52%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-10	-2.480e+01	0.0000	266.0	2.18%	526.2	1.41%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-10	-2.466e+01	0.0000	1325.0	10.85%	3383.4	9.08%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-10	-2.433e+01	0.0000	1972.0	16.15%	5231.4	14.04%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-10	-2.426e+01	0.0000	1514.0	12.40%	3923.4	10.53%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-10	-2.386e+01	0.0000	779.0	6.38%	1878.6	5.04%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-9	-2.299e+01	0.0000	1353.0	11.08%	3486.5	9.36%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-9	-2.298e+01	0.0000	2225.0	18.22%	5986.4	16.07%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-9	-2.294e+01	0.0000	2098.0	17.18%	5619.0	15.09%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-9	-2.249e+01	0.0000	932.0	7.63%	2314.4	6.21%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-9	-2.181e+01	0.0000	654.0	5.36%	1560.9	4.19%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-9	-2.166e+01	0.0000	1551.0	12.70%	4069.7	10.93%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-9	-2.163e+01	0.0000	3659.0	29.97%	10228.9	27.46%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-9	-2.157e+01	0.0000	840.0	6.88%	2072.0	5.56%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-9	-2.134e+01	0.0000	235.0	1.92%	469.8	1.26%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-9	-2.090e+01	0.0000	166.0	1.36%	305.4	0.82%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-8	-1.995e+01	0.0000	95.0	0.78%	148.9	0.40%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-8	-1.949e+01	0.0000	671.0	5.50%	1631.4	4.38%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-8	-1.887e+01	0.0000	1458.0	11.94%	3850.6	10.34%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-7	-1.790e+01	0.0000	337.0	2.76%	751.6	2.02%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-7	-1.789e+01	0.0000	1528.0	12.51%	4068.4	10.92%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-7	-1.777e+01	0.0000	327.0	2.68%	726.6	1.95%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-7	-1.730e+01	0.0000	3005.0	24.61%	8396.0	22.54%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-7	-1.679e+01	0.0000	444.0	3.64%	1044.4	2.80%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-7	-1.629e+01	0.0000	316.0	2.59%	709.1	1.90%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-7	-1.612e+01	0.0000	1760.0	14.41%	4772.2	12.81%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-6	-1.591e+01	0.0000	754.0	6.18%	1904.6	5.11%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-6	-1.539e+01	0.0000	1784.0	14.61%	4857.0	13.04%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-6	-1.517e+01	0.0000	187.0	1.53%	386.8	1.04%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-6	-1.500e+01	0.0000	355.0	2.91%	823.4	2.21%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-6	-1.498e+01	0.0000	1686.0	13.81%	4581.1	12.30%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-6	-1.441e+01	0.0000	4462.0	36.54%	12826.0	34.43%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-6	-1.416e+01	0.0000	1829.0	14.98%	5015.1	13.46%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-5	-1.355e+01	0.0000	2448.0	20.05%	6846.8	18.38%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-5	-1.329e+01	0.0000	1037.0	8.49%	2744.2	7.37%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-5	-1.310e+01	0.0000	828.0	6.78%	2153.9	5.78%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-5	-1.301e+01	0.0000	1237.0	10.13%	3323.8	8.92%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-5	-1.290e+01	0.0000	1238.0	10.14%	3328.8	8.94%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-5	-1.283e+01	0.0000	622.0	5.09%	1578.6	4.24%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-5	-1.243e+01	0.0000	332.0	2.72%	786.7	2.11%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-5	-1.232e+01	0.0000	1629.0	13.34%	4474.1	12.01%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-5	-1.224e+01	0.0000	1276.0	10.45%	3451.5	9.27%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-5	-1.186e+01	0.0000	227.0	1.86%	512.1	1.37%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-5	-1.172e+01	0.0000	808.0	6.62%	2119.6	5.69%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-5	-1.160e+01	0.0000	340.0	2.78%	816.4	2.19%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-4	-1.134e+01	0.0000	1796.0	14.71%	4986.7	13.39%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-4	-1.131e+01	0.0000	616.0	5.05%	1583.9	4.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-1.109e+01	0.0000	2089.0	17.11%	5854.3	15.72%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-4	-1.074e+01	0.0001	706.0	5.78%	1846.7	4.96%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-4	-1.050e+01	0.0001	964.0	7.90%	2588.0	6.95%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-4	-1.025e+01	0.0001	84.0	0.69%	160.3	0.43%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-4	-9.833e+00	0.0001	1277.0	10.46%	3508.0	9.42%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-4	-9.816e+00	0.0001	142.0	1.16%	307.5	0.83%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-4	-9.500e+00	0.0002	701.0	5.74%	1853.1	4.98%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-4	-9.370e+00	0.0002	400.0	3.28%	1007.7	2.71%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-9.296e+00	0.0002	276.0	2.26%	667.2	1.79%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-9.243e+00	0.0002	2352.0	19.26%	6687.9	17.96%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-3	-9.173e+00	0.0002	134.0	1.10%	291.1	0.78%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-9.049e+00	0.0003	528.0	4.32%	1370.4	3.68%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-3	-8.911e+00	0.0003	1412.0	11.56%	3924.3	10.54%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-3	-8.863e+00	0.0003	190.0	1.56%	440.0	1.18%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-3	-8.634e+00	0.0004	122.0	1.00%	264.2	0.71%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-3	-8.312e+00	0.0006	250.0	2.05%	607.0	1.63%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-3	-8.064e+00	0.0007	300.0	2.46%	747.1	2.01%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-7.896e+00	0.0008	855.0	7.00%	2327.8	6.25%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-3	-7.615e+00	0.0011	527.0	4.32%	1391.3	3.74%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-3	-7.413e+00	0.0013	348.0	2.85%	889.7	2.39%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-3	-7.089e+00	0.0018	18.0	0.15%	23.4	0.06%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-3	-7.082e+00	0.0018	1365.0	11.18%	3837.8	10.30%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-6.791e+00	0.0025	136.0	1.11%	315.5	0.85%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.657e+00	0.0028	298.0	2.44%	760.5	2.04%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-6.607e+00	0.0029	132.0	1.08%	306.2	0.82%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-6.325e+00	0.0039	277.0	2.27%	706.9	1.90%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-2	-6.029e+00	0.0052	156.0	1.28%	376.3	1.01%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-5.926e+00	0.0057	194.0	1.59%	481.9	1.29%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-2	-5.766e+00	0.0066	233.0	1.91%	591.2	1.59%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-5.755e+00	0.0067	712.0	5.83%	1962.8	5.27%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-2	-5.456e+00	0.0090	444.0	3.64%	1194.6	3.21%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-5.253e+00	0.0109	214.0	1.75%	545.8	1.47%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-5.214e+00	0.0113	427.0	3.50%	1150.5	3.09%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-5.109e+00	0.0125	4543.0	37.21%	13451.0	36.11%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-4.983e+00	0.0141	278.0	2.28%	729.9	1.96%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-2	-4.940e+00	0.0146	38.0	0.31%	75.1	0.20%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-2	-4.606e+00	0.0204	1660.0	13.60%	4798.1	12.88%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-4.152e+00	0.0319	571.0	4.68%	1592.4	4.28%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-4.061e+00	0.0348	2213.0	18.12%	6478.4	17.39%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-4.052e+00	0.0349	594.0	4.86%	1663.0	4.46%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-4.009e+00	0.0363	518.0	4.24%	1441.2	3.87%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-3.847e+00	0.0425	2849.0	23.33%	8403.3	22.56%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-3.828e+00	0.0431	646.0	5.29%	1821.3	4.89%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.809e+00	0.0437	920.0	7.53%	2630.9	7.06%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-3.773e+00	0.0451	110.0	0.90%	275.0	0.74%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-1	-3.613e+00	0.0527	276.0	2.26%	748.2	2.01%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.493e+00	0.0592	367.0	3.01%	1014.7	2.72%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.464e+00	0.0606	213.0	1.74%	570.8	1.53%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.406e+00	0.0639	689.0	5.64%	1961.9	5.27%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.303e+00	0.0705	158.0	1.29%	416.0	1.12%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-1	-3.260e+00	0.0734	1940.0	15.89%	5701.8	15.31%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.196e+00	0.0778	138.0	1.13%	361.9	0.97%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-1	-3.087e+00	0.0864	1789.0	14.65%	5257.2	14.11%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.061e+00	0.0883	95.0	0.78%	242.6	0.65%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.911e+00	0.1021	510.0	4.18%	1449.1	3.89%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-2.813e+00	0.1122	2189.0	17.93%	6478.0	17.39%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.798e+00	0.1134	364.0	2.98%	1023.6	2.75%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-1	-2.642e+00	0.1320	906.0	7.42%	2635.8	7.08%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.630e+00	0.1330	1148.0	9.40%	3360.0	9.02%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.603e+00	0.1360	372.0	3.05%	1052.3	2.83%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-2.503e+00	0.1497	1049.0	8.59%	3069.5	8.24%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.302e+00	0.1823	68.0	0.56%	176.0	0.47%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.216e+00	0.1978	3336.0	27.32%	9991.5	26.82%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.146e+00	0.2113	1148.0	9.40%	3385.8	9.09%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.131e+00	0.2134	131.0	1.07%	359.7	0.97%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.989e+00	0.2440	140.0	1.15%	388.3	1.04%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.989e+00	0.2440	140.0	1.15%	388.3	1.04%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.876e+00	0.2721	12.0	0.10%	26.0	0.07%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.827e+00	0.2846	283.0	2.32%	813.6	2.18%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.827e+00	0.2846	90.0	0.74%	246.4	0.66%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.807e+00	0.2880	169.0	1.38%	477.7	1.28%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.731e+00	0.3095	1357.0	11.11%	4041.3	10.85%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.714e+00	0.3134	488.0	4.00%	1428.8	3.84%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.701e+00	0.3161	73.0	0.60%	199.4	0.54%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.642e+00	0.3341	35.0	0.29%	91.3	0.25%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.612e+00	0.3430	2289.0	18.75%	6871.5	18.45%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.560e+00	0.3598	541.0	4.43%	1594.9	4.28%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.551e+00	0.3614	92.0	0.75%	257.3	0.69%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.496e+00	0.3806	27.0	0.22%	70.4	0.19%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.416e+00	0.4107	1074.0	8.80%	3209.7	8.62%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.381e+00	0.4234	518.0	4.24%	1534.4	4.12%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.355e+00	0.4330	24.0	0.20%	63.6	0.17%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.352e+00	0.4330	1313.0	10.75%	3937.6	10.57%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.339e+00	0.4363	128.0	1.05%	368.6	0.99%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.339e+00	0.4363	217.0	1.78%	633.6	1.70%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.282e+00	0.4585	5613.0	45.97%	17022.1	45.70%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.245e+00	0.4742	662.0	5.42%	1976.2	5.31%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.220e+00	0.4840	635.0	5.20%	1896.3	5.09%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.212e+00	0.4863	867.0	7.10%	2598.1	6.98%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.208e+00	0.4864	9.0	0.07%	22.0	0.06%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.120e+00	0.5288	531.0	4.35%	1588.9	4.27%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.094e+00	0.5409	129.0	1.06%	379.0	1.02%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.050e+00	0.5632	3236.0	26.50%	9813.6	26.35%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.033e+00	0.5704	513.0	4.20%	1539.4	4.13%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-9.742e-01	0.6029	259.0	2.12%	774.7	2.08%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-9.668e-01	0.6051	327.0	2.68%	981.0	2.63%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.408e-01	0.6187	130.0	1.06%	386.4	1.04%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-9.224e-01	0.6279	72.0	0.59%	212.3	0.57%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-8.854e-01	0.6492	342.0	2.80%	1030.1	2.77%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-8.811e-01	0.6496	63.0	0.52%	186.9	0.50%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.733e-01	0.6522	112.0	0.92%	334.9	0.90%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.581e-01	0.6599	2606.0	21.34%	7922.6	21.27%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.476e-01	0.6644	443.0	3.63%	1339.6	3.60%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.123e-01	0.6858	72.0	0.59%	215.6	0.58%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-7.789e-01	0.7065	157.0	1.29%	474.9	1.27%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.789e-01	0.7065	538.0	4.41%	1633.0	4.38%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.743e-01	0.7065	323.0	2.65%	979.6	2.63%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-7.688e-01	0.7065	1043.0	8.54%	3172.9	8.52%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.594e-01	0.7102	700.0	5.73%	2128.8	5.72%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-7.214e-01	0.7351	4.0	0.03%	11.0	0.03%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.076e-01	0.7427	1627.0	13.33%	4960.6	13.32%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-6.588e-01	0.7771	311.0	2.55%	950.5	2.55%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.210e-01	0.8043	215.0	1.76%	659.8	1.77%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-5.632e-01	0.8491	296.0	2.42%	911.3	2.45%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-5.563e-01	0.8520	34.0	0.28%	106.5	0.29%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.252e-01	0.8759	311.0	2.55%	960.8	2.58%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.201e-01	0.8774	620.0	5.08%	1908.6	5.12%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.068e-01	0.8861	147.0	1.20%	457.6	1.23%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.821e-01	0.9050	8.0	0.07%	26.3	0.07%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-4.272e-01	0.9529	827.0	6.77%	2555.6	6.86%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.199e-01	0.9566	2428.0	19.89%	7460.6	20.03%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.699e-01	1.0000	97.0	0.79%	311.0	0.83%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.575e-01	1.0000	336.0	2.75%	1053.6	2.83%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.343e-01	1.0000	16.0	0.13%	55.9	0.15%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-3.075e-01	1.0000	1931.0	15.81%	5967.7	16.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.960e-01	1.0000	19.0	0.16%	66.0	0.18%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.919e-01	1.0000	3000.0	24.57%	9247.1	24.83%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.909e-01	1.0000	89.0	0.73%	290.8	0.78%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.872e-01	1.0000	419.0	3.43%	1320.0	3.54%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.720e-01	1.0000	3868.0	31.68%	11910.5	31.98%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.651e-01	1.0000	135.0	1.11%	437.1	1.17%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.524e-01	1.0000	48.0	0.39%	162.6	0.44%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.256e-01	1.0000	273.0	2.24%	874.1	2.35%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.239e-01	1.0000	17.0	0.14%	62.8	0.17%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.194e-01	1.0000	570.0	4.67%	1799.1	4.83%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.139e-01	1.0000	340.0	2.78%	1085.5	2.91%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.129e-01	1.0000	46.0	0.38%	158.5	0.43%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.945e-01	1.0000	45.0	0.37%	156.2	0.42%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.931e-01	1.0000	418.0	3.42%	1332.5	3.58%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.926e-01	1.0000	443.0	3.63%	1410.3	3.79%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.910e-01	1.0000	6.0	0.05%	25.9	0.07%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.651e-01	1.0000	135.0	1.11%	448.8	1.20%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.570e-01	1.0000	223.0	1.83%	728.8	1.96%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.156e-01	1.0000	1303.0	10.67%	4103.7	11.02%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.056e-01	1.0000	34.0	0.28%	127.6	0.34%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-9.416e-02	1.0000	3488.0	28.57%	10845.0	29.12%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-8.158e-02	1.0000	197.0	1.61%	662.8	1.78%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-7.985e-02	1.0000	2648.0	21.69%	8276.3	22.22%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.560e-02	1.0000	56.0	0.46%	205.3	0.55%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.375e-02	1.0000	599.0	4.91%	1935.0	5.19%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.951e-02	1.0000	1469.0	12.03%	4646.2	12.47%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.379e-02	1.0000	3094.0	25.34%	9664.8	25.95%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-6.136e-02	1.0000	978.0	8.01%	3127.5	8.40%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.459e-02	1.0000	397.0	3.25%	1316.0	3.53%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.197e-02	1.0000	550.0	4.50%	1801.9	4.84%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.897e-02	1.0000	94.0	0.77%	341.5	0.92%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.812e-02	1.0000	87.0	0.71%	318.9	0.86%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.025e-02	1.0000	78.0	0.64%	292.0	0.78%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.695e-02	1.0000	879.0	7.20%	2852.4	7.66%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.142e-02	1.0000	5.0	0.04%	32.7	0.09%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.092e-02	1.0000	8.0	0.07%	45.6	0.12%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.885e-02	1.0000	4.0	0.03%	28.5	0.08%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.869e-02	1.0000	124.0	1.02%	452.3	1.21%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.857e-02	1.0000	61.0	0.50%	239.6	0.64%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.641e-02	1.0000	2212.0	18.12%	7027.6	18.87%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.321e-02	1.0000	2024.0	16.58%	6455.8	17.33%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.307e-02	1.0000	12.0	0.10%	64.2	0.17%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.017e-02	1.0000	2376.0	19.46%	7560.3	20.30%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-9.944e-03	1.0000	217.0	1.78%	770.2	2.07%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-9.856e-03	1.0000	5336.0	43.70%	16667.4	44.75%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-9.405e-03	1.0000	15.0	0.12%	78.1	0.21%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.996e-03	1.0000	1314.0	10.76%	4259.4	11.44%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-8.741e-03	1.0000	474.0	3.88%	1605.8	4.31%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-8.620e-03	1.0000	26.0	0.21%	121.6	0.33%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-7.339e-03	1.0000	1.0	0.01%	15.8	0.04%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-5.136e-03	1.0000	911.0	7.46%	3012.0	8.09%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.714e-03	1.0000	818.0	6.70%	2719.5	7.30%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.179e-03	1.0000	1056.0	8.65%	3476.8	9.33%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.938e-03	1.0000	335.0	2.74%	1174.7	3.15%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.931e-03	1.0000	229.0	1.88%	826.2	2.22%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.440e-03	1.0000	68.0	0.56%	285.4	0.77%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.355e-03	1.0000	338.0	2.77%	1194.6	3.21%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.073e-03	1.0000	42.0	0.34%	192.2	0.52%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.428e-03	1.0000	233.0	1.91%	856.9	2.30%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.298e-03	1.0000	376.0	3.08%	1330.7	3.57%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.164e-03	1.0000	1094.0	8.96%	3637.6	9.77%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.163e-03	1.0000	256.0	2.10%	936.0	2.51%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.014e-03	1.0000	1281.0	10.49%	4233.6	11.37%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-8.030e-04	1.0000	211.0	1.73%	791.8	2.13%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.750e-04	1.0000	194.0	1.59%	736.9	1.98%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.120e-04	1.0000	616.0	5.05%	2136.0	5.73%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.960e-04	1.0000	68.0	0.56%	302.8	0.81%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.930e-04	1.0000	729.0	5.97%	2501.1	6.71%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.910e-04	1.0000	87.0	0.71%	371.9	1.00%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.370e-04	1.0000	977.0	8.00%	3300.3	8.86%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.680e-04	1.0000	152.0	1.24%	604.8	1.62%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.020e-04	1.0000	93.0	0.76%	399.9	1.07%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.820e-04	1.0000	582.0	4.77%	2042.4	5.48%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.580e-04	1.0000	113.0	0.93%	473.8	1.27%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.340e-04	1.0000	226.0	1.85%	868.0	2.33%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.080e-04	1.0000	561.0	4.59%	1984.5	5.33%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.500e-05	1.0000	306.0	2.51%	1146.2	3.08%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-3.000e-05	1.0000	704.0	5.77%	2476.4	6.65%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-2.000e-06	1.0000	1198.0	9.81%	4133.8	11.10%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.000e-06	1.0000	806.0	6.60%	2865.1	7.69%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.000e-06	1.0000	378.0	3.10%	1451.1	3.90%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.000e-06	1.0000	479.0	3.92%	1798.7	4.83%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.000e-06	1.0000	30.0	0.25%	196.9	0.53%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.000e-06	1.0000	3964.0	32.47%	12870.8	34.55%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.000e-06	1.0000	902.0	7.39%	3202.4	8.60%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	1268.0	10.38%	4391.1	11.79%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-0.000e+00	1.0000	481.0	3.94%	1811.7	4.86%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-0.000e+00	1.0000	752.0	6.16%	2715.2	7.29%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	33.0	0.27%	215.7	0.58%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	272.0	2.23%	1118.9	3.00%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	281.0	2.30%	1150.5	3.09%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-0.000e+00	1.0000	634.0	5.19%	2367.8	6.36%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-0.000e+00	1.0000	25.0	0.20%	192.6	0.52%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-0.000e+00	1.0000	83.0	0.68%	441.1	1.18%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	71.0	0.58%	396.8	1.07%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-0.000e+00	1.0000	5557.0	45.51%	17967.3	48.24%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	43.0	0.35%	291.0	0.78%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	71.0	0.58%	412.4	1.11%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	100.0	0.82%	533.8	1.43%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	2954.0	24.19%	9963.8	26.75%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	31.0	0.25%	259.0	0.70%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-0.000e+00	1.0000	806.0	6.60%	3071.6	8.25%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	138.0	1.13%	726.8	1.95%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	3764.0	30.83%	12698.7	34.09%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	0.000e+00	1.0000	915.0	7.49%	3654.1	9.81%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	2545.0	20.84%	9041.7	24.27%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	144.0	1.18%	909.8	2.44%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	1262.0	10.34%	6455.7	17.33%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	204.0	1.67%	1872.1	5.03%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	700.0	5.73%	4637.2	12.45%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	376.0	3.08%	2940.3	7.89%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	314.0	2.57%	2627.2	7.05%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	173.0	1.42%	1705.1	4.58%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	1013.0	8.30%	4586.5	12.31%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	0.000e+00	1.0000	813.0	6.66%	3413.6	9.16%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	958.0	7.85%	4911.6	13.19%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	41.0	0.34%	381.5	1.02%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	700.0	5.73%	3286.2	8.82%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	48.0	0.39%	539.2	1.45%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	389.0	3.19%	2431.3	6.53%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	1685.0	13.80%	6230.3	16.73%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	859.0	7.04%	3782.6	10.16%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	511.0	4.19%	2552.5	6.85%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	676.0	5.54%	3141.3	8.43%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	1557.0	12.75%	6599.3	17.72%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	1343.0	11.00%	5872.4	15.77%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	1141.0	9.34%	6394.7	17.17%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	1484.0	12.15%	7484.3	20.09%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	816.0	6.68%	4115.2	11.05%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	6.6	0.02%