Information for 6-AGCCAARG (Motif 6)

C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G
Reverse Opposite:
G T A C A G C T A C G T A G C T C T A G T C A G T G A C G C A T
p-value:1e-152
log p-value:-3.503e+02
Information Content per bp:1.585
Number of Target Sequences with motif3033.0
Percentage of Target Sequences with motif45.75%
Number of Background Sequences with motif12900.6
Percentage of Background Sequences with motif30.34%
Average Position of motif in Targets101.1 +/- 55.7bp
Average Position of motif in Background99.7 +/- 65.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--AGCCAARG
CGTGCCAAG-
 A C G T A C G T C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--AGCCAARG
GGTGCCAAGT
 A C G T A C G T C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAARG-
NNTGCCAAGNN
 A C G T A C G T C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AGCCAARG
TTGCCAAG-
 A C G T C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGCCAARG
ATGCCAACC
 A C G T C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AGCCAARG--------
TGCCAAAATAAACANN
 C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGCCAARG-
ACTAGCCAATCA
 A C G T A C G T A C G T C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGCCAARG
TGCCAGCB
 C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G
G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGCCAARG--
AGCCAATCGG
 C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G A C G T A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGCCAARG----
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C G A T C T C G A T G C A T C G A C A T G A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C