Information for 10-NNCTGTCTGG (Motif 7)

A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G
Reverse Opposite:
A T G C A G T C G C T A T C A G G T C A G T A C C G T A A C T G G A C T T G C A
p-value:1e-126
log p-value:-2.906e+02
Information Content per bp:1.593
Number of Target Sequences with motif2547.0
Percentage of Target Sequences with motif38.42%
Number of Background Sequences with motif10654.5
Percentage of Background Sequences with motif25.06%
Average Position of motif in Targets98.2 +/- 56.0bp
Average Position of motif in Background100.2 +/- 65.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.96
Offset:2
Orientation:forward strand
Alignment:NNCTGTCTGG
--CTGTCTGG
 A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--NNCTGTCTGG-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.92
Offset:0
Orientation:forward strand
Alignment:NNCTGTCTGG
VBSYGTCTGG
 A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.88
Offset:2
Orientation:forward strand
Alignment:NNCTGTCTGG
--TWGTCTGV
 A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad4/MA1153.1/Jaspar

Match Rank:5
Score:0.86
Offset:3
Orientation:forward strand
Alignment:NNCTGTCTGG-
---TGTCTAGA
 A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G A C G T
A C G T A C G T A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.77
Offset:3
Orientation:forward strand
Alignment:NNCTGTCTGG---
---GGTCTGGCAT
 A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:NNCTGTCTGG-----
--CTGTCTGTCACCT
 A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:NNCTGTCTGG-----
---TGTCTGDCACCT
 A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:NNCTGTCTGG
--NTGTCAN-
 A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G
A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:NNCTGTCTGG--
VCCTCTCTGDDY
 A C G T C T G A T G A C G C A T C A T G C A G T A G T C C G A T T C A G T A C G A C G T A C G T
T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C